Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_014043 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:41079089-41088546 (-) |
| Description | Similar to RAD4: DNA repair protein RAD4 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_014043 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 40 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g16630 |
Essential protein. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000720 | pyrimidine dimer repair by nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000724 | double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=TAS:ProtInc | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006298 | mismatch repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009410 | response to xenobiotic stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009411 | response to UV | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009650 | UV protection | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010224 | response to UV-B | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59; UniProt GO evidence=IMP:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010777 | meiotic mismatch repair involved in reciprocal meiotic recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.734; coverage=29.455; evalue=6.7e-57; UniProt GO evidence=IGI:FlyBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010996 | response to auditory stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031573 | mitotic intra-S DNA damage checkpoint signaling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59; UniProt GO evidence=IGI:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045721 | negative regulation of gluconeogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045893 | positive regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070914 | UV-damage excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IDA:CACAO | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901990 | regulation of mitotic cell cycle phase transition | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000109 | nucleotide-excision repair complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000111 | nucleotide-excision repair factor 2 complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=ISS:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071942 | XPC complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0072686 | mitotic spindle | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.722; coverage=29.703; evalue=4.04e-28; UniProt GO evidence=HDA:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090734 | site of DNA damage | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000404 | heteroduplex DNA loop binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000405 | bubble DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003684 | damaged DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044877 | protein-containing complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061629 | RNA polymerase II-specific DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140612 | DNA damage sensor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62; UniProt GO evidence=IDA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G16630 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.953; coverage=76.568; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dme:Dmel_CG8153 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.734; coverage=29.455; evalue=6.7e-57 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:7508 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=29.303; coverage=58.003; evalue=3.1e-62 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:22591 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.602; coverage=31.518; evalue=5.24e-59 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2542967 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.722; coverage=29.703; evalue=4.04e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release |