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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_013660
Query referenceOH1004
LocationChr03:33759289-33765078 (+)
DescriptionSimilar to TPC1: Two pore calcium channel protein 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013660 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g03560 May act as a voltage-gated inward-rectifying Ca²⁺ channel in the vacuolar membrane.
Aluminum as a specific inhibitor of plant TPC1 Ca2+ channels.2004 · DOI: 10.1016/j.bbrc.2004.09.015
The vacuolar Ca2+-activated channel TPC1 regulates germination and stomatal movement.2005 · DOI: 10.1038/nature03381

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0678500 May act as a voltage-gated Ca²⁺ channel in calcium signaling and defense responses.
Functional analysis of a rice putative voltage-dependent Ca2+ channel, OsTPC1, expressed in yeast cells lacking its homologous gene CCH1.2004 · DOI: 10.1093/pcp/pch053
Identification of a putative voltage-gated Ca2+ -permeable channel (OsTPC1) involved in Ca2+ influx and regulation of growth and development in rice.2004 · DOI: 10.1093/pcp/pch082
Identification of a putative voltage-gated Ca2+ channel as a key regulator of elicitor-induced hypersensitive cell death and mitogen-activated protein kinase activation in rice.2005 · DOI: 10.1111/j.1365-313x.2005.02415.x

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006816calcium ion transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.522; coverage=39.316; evalue=7.03e-50; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009845seed germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010119regulation of stomatal movementBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019722calcium-mediated signalingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080141regulation of jasmonic acid biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000325plant-type vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005773vacuoleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005774vacuolar membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034702monoatomic ion channel complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005245voltage-gated calcium channel activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005262calcium channel activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IMP:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005509calcium ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G03560KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=54.301; coverage=39.744; evalue=1.38e-56UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0678500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=54.696; coverage=38.675; evalue=1.95e-40UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGnta:107770546KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=56.522; coverage=39.316; evalue=7.03e-50UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGnta:107819477KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=55.435; coverage=39.316; evalue=6.05e-48UniProtKB/Swiss-Prot DAT 2026 current_release