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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_013574
Query referenceOH1004
LocationChr03:31980398-31983019 (-)
DescriptionSimilar to MRG1: Protein MRG1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013574 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37280 Chromatin remodeling factor.
Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes.2014 · DOI: 10.1093/nar/gku781
Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.2014 · DOI: 10.1371/journal.pgen.1004617
At1g02740 Chromatin remodeling factor.
Arabidopsis MRG domain proteins bridge two histone modifications to elevate expression of flowering genes.2014 · DOI: 10.1093/nar/gku781
Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression.2014 · DOI: 10.1371/journal.pgen.1004617

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000724double-strand break repair via homologous recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.462; coverage=103.503; evalue=6.14e-50; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006325chromatin organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006338chromatin remodelingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.462; coverage=103.503; evalue=6.14e-50; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008283cell population proliferationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0040029epigenetic regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.211; coverage=100.955; evalue=2.2e-99; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048510regulation of timing of transition from vegetative to reproductive phaseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.211; coverage=100.955; evalue=2.2e-99; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048586regulation of long-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051726regulation of cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905168positive regulation of double-strand break repair via homologous recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000123histone acetyltransferase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000786nucleosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032221Rpd3S complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.462; coverage=103.503; evalue=6.14e-50; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035267NuA4 histone acetyltransferase complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070822Sin3-type complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003682chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0140003histone H3K36me3 reader activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.211; coverage=100.955; evalue=2.2e-99; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990841promoter-specific chromatin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G02740KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.211; coverage=100.955; evalue=2.2e-99UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G37280KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.236; coverage=100.0; evalue=6.67e-133UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGpon:100174761KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.452; coverage=95.223; evalue=1.66e-51UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:300891KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=35.786; coverage=95.223; evalue=2.85e-52UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGuma:UMAG_10504KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.462; coverage=103.503; evalue=6.14e-50UniProtKB/Swiss-Prot DAT 2026 current_release