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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_013474
Query referenceOH1004
LocationChr03:30144759-30150065 (-)
DescriptionSimilar to CRWN1: Protein CROWDED NUCLEI 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013474 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g67230 Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity).
LITTLE NUCLEI genes affecting nuclear morphology in Arabidopsis thaliana.2007 · DOI: 10.1105/tpc.107.053231
LITTLE NUCLEI 1 and 4 regulate nuclear morphology in Arabidopsis thaliana.2013 · DOI: 10.1093/pcp/pct031
Arabidopsis CROWDED NUCLEI (CRWN) proteins are required for nuclear size control and heterochromatin organization.2013 · DOI: 10.1186/1471-2229-13-200
The Novel Nuclear Envelope Protein KAKU4 Modulates Nuclear Morphology in Arabidopsis.2014 · DOI: 10.1105/tpc.113.122168
At1g68790 Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments (By similarity).
LITTLE NUCLEI 1 and 4 regulate nuclear morphology in Arabidopsis thaliana.2013 · DOI: 10.1093/pcp/pct031

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0709900 Architectural component of nuclear structure that plays different roles in controlling nuclear size and morphology. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006997nucleus organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.551; coverage=97.451; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043578nuclear matrix organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.023; coverage=73.067; evalue=6.86e-166; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0097298regulation of nucleus sizeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000785chromatinCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005576extracellular regionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005635nuclear envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005652nuclear laminaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.551; coverage=97.451; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.758; coverage=98.131; evalue=2.63e-150; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.758; coverage=98.131; evalue=2.63e-150; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009506plasmodesmaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.758; coverage=98.131; evalue=2.63e-150; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016363nuclear matrixCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=44.551; coverage=97.451; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031965nuclear membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0034399nuclear peripheryCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035861site of double-strand breakCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G67230KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.285; coverage=101.869; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G68790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.758; coverage=98.131; evalue=2.63e-150UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0709900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.643; coverage=103.908; evalue=2.12e-144UniProtKB/Swiss-Prot DAT 2026 current_release