Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_013351`
Query reference	OH1004
Location	Chr03:28221434-28223718 (+)
Description	Similar to PCO2: Plant cysteine oxidase 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013351 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 11 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39890`	Catalyzes the oxidation of N-terminal cysteine residues (N-Cys), thus preparing the protein for N-end rule pathway-mediated proteasomal degradation, upstream of the N-end rule enzymes ATE1, ATE2 and PRT6.	Molecular basis for cysteine oxidation by plant cysteine oxidases from Arabidopsis thaliana.2021 · DOI: 10.1016/j.jsb.2020.107663
`At5g15120`	Catalyzes the oxidation of N-terminal cysteine residues (N-Cys), thus preparing the protein for N-end rule pathway-mediated proteasomal degradation, upstream of the N-end rule enzymes ATE1, ATE2 and PRT6.	No verified direct reference in this release
`At3g58670`	Catalyzes the oxidation of N-terminal cysteine residues (N-Cys), thus preparing the protein for N-end rule pathway-mediated proteasomal degradation, upstream of the N-end rule enzymes ATE1, ATE2 and PRT6 (Probable).	Structures of Arabidopsis thaliana oxygen-sensing plant cysteine oxidases 4 and 5 enable targeted manipulation of their activity.2020 · DOI: 10.1073/pnas.2000206117 Molecular basis for cysteine oxidation by plant cysteine oxidases from Arabidopsis thaliana.2021 · DOI: 10.1016/j.jsb.2020.107663
`At2g42670`	Catalyzes the oxidation of N-terminal cysteine residues (N-Cys), thus preparing the protein for N-end rule pathway-mediated proteasomal degradation, upstream of the N-end rule enzymes ATE1, ATE2 and PRT6 (Probable).	The plant cysteine oxidases from Arabidopsis thaliana are kinetically tailored to act as oxygen sensors.2018 · DOI: 10.1074/jbc.ra118.003496 Structures of Arabidopsis thaliana oxygen-sensing plant cysteine oxidases 4 and 5 enable targeted manipulation of their activity.2020 · DOI: 10.1073/pnas.2000206117 Molecular basis for cysteine oxidation by plant cysteine oxidases from Arabidopsis thaliana.2021 · DOI: 10.1016/j.jsb.2020.107663
`At1g18490`	Catalyzes the oxidation of N-terminal cysteine residues (N-Cys), thus preparing the protein for N-end rule pathway-mediated proteasomal degradation, upstream of the N-end rule enzymes ATE1, ATE2 and PRT6 (Probable).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0001666	response to hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009061	anaerobic respiration	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.939; coverage=94.565; evalue=3.57e-93; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0018171	peptidyl-cysteine oxidation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070483	detection of hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071456	cellular response to hypoxia	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97; UniProt GO evidence=HEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.157; coverage=92.029; evalue=3.82e-61; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.476; coverage=91.304; evalue=3.28e-60; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005506	iron ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0017172	cysteine dioxygenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G18490	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.0; coverage=94.203; evalue=1.39e-55	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G42670	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.476; coverage=91.304; evalue=3.28e-60	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G58670	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=40.157; coverage=92.029; evalue=3.82e-61	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G15120	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=55.939; coverage=94.565; evalue=3.57e-93	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G39890	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.18; coverage=96.739; evalue=7.42e-97	UniProtKB/Swiss-Prot DAT 2026 current_release