Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_013323 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:27775608-27778140 (+) |
| Description | Similar to BARD1: BRCA1-associated RING domain protein 1 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_013323 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 57 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g04020 |
Binds specifically to H3K4me3 regions of target genes (e.g. WUS and WOX5) promoters to repress their transcription via chromatin remodeling. |
A homologue of the breast cancer-associated gene BARD1 is involved in DNA repair in plants.2006 · DOI: 10.1038/sj.emboj.7601313
|
At4g21070 |
Plays a role in DNA repair and in cell-cycle control. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000724 | double-strand break repair via homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001894 | tissue homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=TAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006282 | regulation of DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.796; coverage=80.0; evalue=4.34e-93; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006338 | chromatin remodeling | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=TAS:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=TAS:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006974 | DNA damage response | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007283 | spermatogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.694; coverage=46.735; evalue=2.65e-18; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009934 | regulation of meristem structural organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010078 | maintenance of root meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010332 | response to gamma radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.796; coverage=80.0; evalue=4.34e-93; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010492 | maintenance of shoot apical meristem identity | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031441 | negative regulation of mRNA 3'-end processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034599 | cellular response to oxidative stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.694; coverage=46.735; evalue=2.65e-18; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035825 | homologous recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042325 | regulation of phosphorylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044818 | mitotic G2/M transition checkpoint | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045732 | positive regulation of protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045786 | negative regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045787 | positive regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045892 | negative regulation of DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046826 | negative regulation of protein export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048366 | leaf development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051726 | regulation of cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0065004 | protein-DNA complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071372 | cellular response to follicle-stimulating hormone stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.694; coverage=46.735; evalue=2.65e-18; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071394 | cellular response to testosterone stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.694; coverage=46.735; evalue=2.65e-18; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071479 | cellular response to ionizing radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071480 | cellular response to gamma radiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.796; coverage=80.0; evalue=4.34e-93; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0085020 | protein K6-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0110025 | DNA strand resection involved in replication fork processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904044 | response to aldosterone | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.694; coverage=46.735; evalue=2.65e-18; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000001 | regulation of DNA damage checkpoint | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000151 | ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000152 | nuclear ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036464 | cytoplasmic ribonucleoprotein granule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070532 | BRCA1-B complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070533 | BRCA1-C complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISO:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.216; coverage=77.347; evalue=2.55e-106; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019900 | kinase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=NAS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046982 | protein heterodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061649 | ubiquitin-modified histone reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=TAS:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140863 | histone H2AK127 ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=TAS:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140864 | histone H2AK129 ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17; UniProt GO evidence=TAS:ARUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G21070 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=39.796; coverage=80.0; evalue=4.34e-93 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:580 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.004; coverage=46.735; evalue=1.12e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:12021 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.258; coverage=46.735; evalue=2.55e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:64557 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.694; coverage=46.735; evalue=2.65e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release |