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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_013287
Query referenceOH1004
LocationChr03:27108771-27112303 (+)
DescriptionSimilar to LSF1: Phosphoglucan phosphatase LSF1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013287 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 60 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g01510 Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation.
A putative phosphatase, LSF1, is required for normal starch turnover in Arabidopsis leaves.2010 · DOI: 10.1104/pp.109.148981
At3g52180 Starch granule-associated phosphoglucan phosphatase involved in the control of starch accumulation.
Similar protein phosphatases control starch metabolism in plants and glycogen metabolism in mammals.2006 · DOI: 10.1074/jbc.m600519200
A chloroplast-localized dual-specificity protein phosphatase in Arabidopsis contains a phylogenetically dispersed and ancient carbohydrate-binding domain, which binds the polysaccharide starch.2006 · DOI: 10.1111/j.1365-313x.2006.02704.x
STARCH-EXCESS4 is a laforin-like Phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana.2009 · DOI: 10.1105/tpc.108.064360
The Laforin-like dual-specificity phosphatase SEX4 from Arabidopsis hydrolyzes both C6- and C3-phosphate esters introduced by starch-related dikinases and thereby affects phase transition of alpha-glucans.2010 · DOI: 10.1104/pp.109.149914
The phosphoglucan phosphatase like sex Four2 dephosphorylates starch at the C3-position in Arabidopsis.2011 · DOI: 10.1105/tpc.111.092155
Engineering starch accumulation by manipulation of phosphate metabolism of starch.2012 · DOI: 10.1111/j.1467-7652.2012.00684.x
Phosphoglucan-bound structure of starch phosphatase Starch Excess4 reveals the mechanism for C6 specificity.2014 · DOI: 10.1073/pnas.1400757111
At3g10940 Starch-associated phosphoglucan phosphatase that selectively dephosphorylates the glucan C3 position.
The phosphoglucan phosphatase like sex Four2 dephosphorylates starch at the C3-position in Arabidopsis.2011 · DOI: 10.1105/tpc.111.092155
Structure of the Arabidopsis glucan phosphatase like sex four2 reveals a unique mechanism for starch dephosphorylation.2013 · DOI: 10.1105/tpc.113.112706

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000045autophagosome assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001558regulation of cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0001932regulation of protein phosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005977glycogen metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005978glycogen biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005982starch metabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.545; coverage=37.415; evalue=1.31e-30; UniProt GO evidence=IMP:CACAOUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005983starch catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.505; coverage=72.245; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006470protein dephosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006816calcium ion transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006914autophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007005mitochondrion organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010629negative regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010923negative regulation of phosphatase activityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015813L-glutamate transmembrane transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016055Wnt signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016239positive regulation of macroautophagyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016311dephosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031396regulation of protein ubiquitinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032007negative regulation of TOR signalingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0033137negative regulation of peptidyl-serine phosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035305negative regulation of dephosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035335peptidyl-tyrosine dephosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042306regulation of protein import into nucleusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042325regulation of phosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043161proteasome-mediated ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045786negative regulation of cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045859regulation of protein kinase activityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046835carbohydrate phosphorylationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0061136regulation of proteasomal protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1903076regulation of protein localization to plasma membraneBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904666regulation of ubiquitin protein ligase activityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000465regulation of glycogen (starch) synthase activityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.298; coverage=35.646; evalue=3.67e-29; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.545; coverage=37.415; evalue=1.31e-30; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009501amyloplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=31.298; coverage=35.646; evalue=3.67e-29; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.505; coverage=72.245; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009569chloroplast starch grainCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.505; coverage=72.245; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009570chloroplast stromaCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.505; coverage=72.245; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043036starch grainCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.505; coverage=72.245; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098554cytoplasmic side of endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0098556cytoplasmic side of rough endoplasmic reticulum membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004373alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=IEA:EnsemblUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004721phosphoprotein phosphatase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.505; coverage=72.245; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004722protein serine/threonine phosphatase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004725protein tyrosine phosphatase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016791phosphatase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0019203carbohydrate phosphatase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.505; coverage=72.245; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030246carbohydrate bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030247polysaccharide bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.545; coverage=37.415; evalue=1.31e-30; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042803protein homodimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046983protein dimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISO:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0050308sugar-phosphatase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.227; coverage=23.946; evalue=5.45e-26; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2001066amylopectin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.545; coverage=37.415; evalue=1.31e-30; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2001069glycogen bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2001070starch bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.545; coverage=37.415; evalue=1.31e-30; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G01510KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.505; coverage=72.245; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G10940KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.227; coverage=23.946; evalue=5.45e-26UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G52180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=30.545; coverage=37.415; evalue=1.31e-30UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:114005KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.48; coverage=23.537; evalue=4.45e-07UniProtKB/Swiss-Prot DAT 2026 current_release