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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_013122
Query referenceOH1004
LocationChr03:24424048-24425807 (+)
DescriptionSimilar to RER1: Protein RETICULATA-RELATED 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_013122 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g22790 May play a role in leaf development.
Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family.2013 · DOI: 10.1104/pp.113.217323
At2g37860 May play a role in leaf development.
The lower cell density of leaf parenchyma in the Arabidopsis thaliana mutant lcd1-1 is associated with increased sensitivity to ozone and virulent Pseudomonas syringae.2003 · DOI: 10.1046/j.1365-313x.2003.01795.x
Mutations in the RETICULATA gene dramatically alter internal architecture but have little effect on overall organ shape in Arabidopsis leaves.2006 · DOI: 10.1093/jxb/erl063
At5g12470 May play a role in leaf development. No verified direct reference in this release
At3g08640 May play a role in leaf development.
Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family.2013 · DOI: 10.1104/pp.113.217323
At3g08630 May play a role in leaf development. No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000302response to reactive oxygen speciesBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.186; coverage=70.743; evalue=3.94e-151; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009648photoperiodismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.186; coverage=70.743; evalue=3.94e-151; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.186; coverage=70.743; evalue=3.94e-151; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.783; coverage=55.156; evalue=3.58e-28; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015822ornithine transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.064; coverage=71.223; evalue=5.71e-163; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048366leaf developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.186; coverage=70.743; evalue=3.94e-151; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0099402plant organ developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.064; coverage=71.223; evalue=5.71e-163; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.186; coverage=70.743; evalue=3.94e-151; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.783; coverage=55.156; evalue=3.58e-28; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.186; coverage=70.743; evalue=3.94e-151; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009536plastidCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.064; coverage=71.223; evalue=5.71e-163; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009706chloroplast inner membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.064; coverage=71.223; evalue=5.71e-163; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009941chloroplast envelopeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.064; coverage=71.223; evalue=5.71e-163; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031969chloroplast membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.783; coverage=55.156; evalue=3.58e-28; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000064L-ornithine transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.064; coverage=71.223; evalue=5.71e-163; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G37860KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=71.186; coverage=70.743; evalue=3.94e-151UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G08630KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.441; coverage=54.916; evalue=2.16e-26UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G08640KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.783; coverage=55.156; evalue=3.58e-28UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G12470KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.333; coverage=71.942; evalue=1.39e-32UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G22790KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=73.064; coverage=71.223; evalue=5.71e-163UniProtKB/Swiss-Prot DAT 2026 current_release