Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_012591 |
|---|---|
| Query reference | OH1004 |
| Location | Chr03:15229259-15232098 (+) |
| Description | Similar to RDM3: Protein RNA-directed DNA methylation 3 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_012591 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g04290 |
Effector of RNA-directed DNA methylation (RdDM) triggered by small interfering RNAs (siRNAs, 24-nt RNAs). |
An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein.2009 · DOI: 10.1016/j.cell.2009.04.028
|
At2g34210 |
May regulate transcription elongation by RNA polymerase II. | No verified direct reference in this release |
At4g08350 |
May regulate transcription elongation by RNA polymerase II. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006357 | regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006368 | transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.026; coverage=32.692; evalue=1.24e-08; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006412 | translation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.342; coverage=33.761; evalue=9.95e-23; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030422 | siRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031507 | heterochromatin formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032784 | regulation of DNA-templated transcription elongation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080188 | gene silencing by siRNA-directed DNA methylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000785 | chromatin | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.026; coverage=32.692; evalue=1.24e-08; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005840 | ribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.342; coverage=33.761; evalue=9.95e-23; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032044 | DSIF complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003682 | chromatin binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003711 | transcription elongation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.026; coverage=32.692; evalue=1.24e-08; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003735 | structural constituent of ribosome | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.342; coverage=33.761; evalue=9.95e-23; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140463 | chromatin-protein adaptor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.026; coverage=32.692; evalue=1.24e-08; UniProt GO evidence=IEA:EnsemblFungi | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G34210 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.342; coverage=33.761; evalue=9.95e-23 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G08350 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.446; coverage=29.701; evalue=1.66e-22 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G04290 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.0; coverage=26.923; evalue=7.51e-31 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | cne:CNA06210 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=29.63; coverage=28.846; evalue=2.49e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | uma:UMAG_10033 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.026; coverage=32.692; evalue=1.24e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |