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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_012289
Query referenceOH1004
LocationChr03:9804612-9808331 (-)
DescriptionSimilar to UBA2B: UBP1-associated protein 2B (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012289 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g41060 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of a complex regulating the turnover of mRNAs in the nucleus. No verified direct reference in this release
At3g56860 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of a complex regulating the turnover of mRNAs in the nucleus.
UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants.2002 · DOI: 10.1128/mcb.22.12.4346-4357.2002
At3g15010 Heterogeneous nuclear ribonucleoprotein (hnRNP)-like protein that acts as a component of a complex regulating the turnover of mRNAs in the nucleus. No verified direct reference in this release
At2g22090 Acts as a component of a complex regulating the turnover of mRNAs in the nucleus.
UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants.2002 · DOI: 10.1128/mcb.22.12.4346-4357.2002

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0265800 RNA-binding protein that binds to a cis-localization element or zipcode, within the 5'-CDS of prolamine RNA.
Characterization of RNA binding protein RBP-P reveals a possible role in rice glutelin gene expression and RNA localization.2014 · DOI: 10.1007/s11103-014-0191-z
RNA-Binding Protein RBP-P Is Required for Glutelin and Prolamine mRNA Localization in Rice Endosperm Cells.2018 · DOI: 10.1105/tpc.18.00321
Zipcode RNA-Binding Proteins and Membrane Trafficking Proteins Cooperate to Transport Glutelin mRNAs in Rice Endosperm.2020 · DOI: 10.1105/tpc.20.00111

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006952defense responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.848; coverage=63.9; evalue=4.01e-74; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009693ethylene biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.848; coverage=63.9; evalue=4.01e-74; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009738abscisic acid-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.772; coverage=57.123; evalue=6.69e-74; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010150leaf senescenceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.848; coverage=63.9; evalue=4.01e-74; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0012501programmed cell deathBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.848; coverage=63.9; evalue=4.01e-74; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048255mRNA stabilizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.772; coverage=57.123; evalue=6.69e-74; UniProt GO evidence=NAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051028mRNA transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.479; coverage=32.918; evalue=3.02e-70; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.848; coverage=63.9; evalue=4.01e-74; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.991; coverage=31.95; evalue=1.91e-50; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.848; coverage=63.9; evalue=4.01e-74; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.848; coverage=63.9; evalue=4.01e-74; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035925mRNA 3'-UTR AU-rich region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.772; coverage=57.123; evalue=6.69e-74; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.226; coverage=17.151; evalue=2.17e-35; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G22090KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=53.226; coverage=17.151; evalue=2.17e-35UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G41060KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.848; coverage=63.9; evalue=4.01e-74UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G15010KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.991; coverage=31.95; evalue=1.91e-50UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G56860KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.772; coverage=57.123; evalue=6.69e-74UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0265800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=47.479; coverage=32.918; evalue=3.02e-70UniProtKB/Swiss-Prot DAT 2026 current_release