Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_012250`
Query reference	OH1004
Location	Chr03:9072265-9074878 (-)
Description	Similar to ATE2: Arginyl-tRNA--protein transferase 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012250 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g11240`	Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein.	The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis.2009 · DOI: 10.1073/pnas.0810280106
`At5g05700`	Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein.	A delayed leaf senescence mutant is defective in arginyl-tRNA:protein arginyltransferase, a component of the N-end rule pathway in Arabidopsis.2002 · DOI: 10.1046/j.1365-313x.2002.01407.x The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis.2009 · DOI: 10.1073/pnas.0810280106

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006511	ubiquitin-dependent protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.344; coverage=77.403; evalue=1.64e-80; UniProt GO evidence=IDA:UniProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006979	response to oxidative stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.344; coverage=77.403; evalue=1.64e-80; UniProt GO evidence=IDA:UniProt	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010029	regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.525; coverage=106.577; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010498	proteasomal protein catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016598	protein arginylation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.344; coverage=77.403; evalue=1.64e-80; UniProt GO evidence=NAS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0044314	protein K27-linked ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.231; coverage=32.884; evalue=5.6e-51; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050994	regulation of lipid catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070534	protein K63-linked ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.231; coverage=32.884; evalue=5.6e-51; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071211	protein targeting to vacuole involved in autophagy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.231; coverage=32.884; evalue=5.6e-51; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071596	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.344; coverage=77.403; evalue=1.64e-80; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.344; coverage=77.403; evalue=1.64e-80; UniProt GO evidence=IDA:HPA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004057	arginyl-tRNA--protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G11240	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.801; coverage=105.228; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G05700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=49.525; coverage=106.577; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:11101	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.344; coverage=77.403; evalue=1.64e-80	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:11907	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=49.231; coverage=32.884; evalue=5.6e-51	UniProtKB/Swiss-Prot DAT 2026 current_release