Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_012089`
Query reference	OH1004
Location	Chr03:6140209-6142873 (+)
Description	Similar to MAGO2: Protein mago nashi homolog 2 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_012089 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g02140`	Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Functional interconnections of Arabidopsis exon junction complex proteins and genes at multiple steps of gene expression.2011 · DOI: 10.1093/jxb/err202 A New Mutation, hap1-2, Reveals a C Terminal Domain Function in AtMago Protein and Its Biological Effects in Male Gametophyte Development in Arabidopsis thaliana.2016 · DOI: 10.1371/journal.pone.0148200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0287200`	Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Uncovering Divergence of Rice Exon Junction Complex Core Heterodimer Gene Duplication Reveals Their Essential Role in Growth, Development, and Reproduction.2014 · DOI: 10.1104/pp.114.237958 Targeting MAGO proteins with a peptide aptamer reinforces their essential roles in multiple rice developmental pathways.2014 · DOI: 10.1111/tpj.12672
`Os08g0107900`	Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Uncovering Divergence of Rice Exon Junction Complex Core Heterodimer Gene Duplication Reveals Their Essential Role in Growth, Development, and Reproduction.2014 · DOI: 10.1104/pp.114.237958 Targeting MAGO proteins with a peptide aptamer reinforces their essential roles in multiple rice developmental pathways.2014 · DOI: 10.1111/tpj.12672

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000398	mRNA splicing, via spliceosome	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006406	mRNA export from nucleus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=NAS:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006417	regulation of translation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008380	RNA splicing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=86.577; coverage=96.129; evalue=2.26e-96; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010183	pollen tube guidance	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=86.577; coverage=96.129; evalue=2.26e-96; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010628	positive regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=86.577; coverage=96.129; evalue=2.26e-96; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050684	regulation of mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=ISS:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051028	mRNA transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000622	regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=ISS:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000932	P-body	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=86.577; coverage=96.129; evalue=2.26e-96; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=86.577; coverage=96.129; evalue=2.26e-96; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005730	nucleolus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=86.577; coverage=96.129; evalue=2.26e-96; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=NAS:ComplexPortal	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016607	nuclear speck	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=86.577; coverage=96.129; evalue=2.26e-96; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0035145	exon-exon junction complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071005	U2-type precatalytic spliceosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071006	U2-type catalytic step 1 spliceosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071013	catalytic step 2 spliceosome	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990501	exon-exon junction subcomplex mago-y14	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G02140	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=86.577; coverage=96.129; evalue=2.26e-96	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os08g0107900	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=90.909; coverage=92.258; evalue=1.35e-96	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os12g0287200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:66441	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.379; coverage=93.548; evalue=1.5e-86	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4351998	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=92.466; coverage=94.194; evalue=6.66e-101	UniProtKB/Swiss-Prot DAT 2026 current_release