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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_011437
Query referenceOH1004
LocationChr02:164164796-164173996 (+)
DescriptionSimilar to AGL70: Agamous-like MADS-box protein AGL70 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011437 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 34 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g65060 Probable transcription factor involved in the negative regulation of flowering time, probably through the photoperiodic and vernalization pathways; more efficient in cv. No verified direct reference in this release
At5g65050 Probable transcription factor that prevents vernalization by short periods of cold. No verified direct reference in this release
At5g65080 Transcription factor involved in the negative regulation of flowering time in short days, probably through the photoperiodic and vernalization pathways.
Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold.2003 · DOI: 10.1105/tpc.009506
The E2 ubiquitin-conjugating enzymes, AtUBC1 and AtUBC2, play redundant roles and are involved in activation of FLC expression and repression of flowering in Arabidopsis thaliana.2009 · DOI: 10.1111/j.1365-313x.2008.03684.x
The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5.2010 · DOI: 10.1073/pnas.1010834107
Role of VIN3-LIKE 2 in facultative photoperiodic flowering response in Arabidopsis.2010 · DOI: 10.4161/psb.5.12.14035
AGAMOUS-LIKE 6 is a floral promoter that negatively regulates the FLC/MAF clade genes and positively regulates FT in Arabidopsis.2011 · DOI: 10.1111/j.1365-313x.2010.04402.x
HISTONE DEACETYLASE6 interacts with FLOWERING LOCUS D and regulates flowering in Arabidopsis.2011 · DOI: 10.1104/pp.111.174417
Arabidopsis trithorax-related3/SET domain GROUP2 is required for the winter-annual habit of Arabidopsis thaliana.2012 · DOI: 10.1093/pcp/pcs021

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0682200 Probable transcription factor.
MOSAIC FLORAL ORGANS1, an AGL6-like MADS box gene, regulates floral organ identity and meristem fate in rice.2009 · DOI: 10.1105/tpc.109.068742

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.291; coverage=96.262; evalue=5.45e-35; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006357regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009553embryo sac developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.291; coverage=96.262; evalue=5.45e-35; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009910negative regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010022meristem determinacyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010048vernalization responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010093specification of floral organ identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010094specification of carpel identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010221negative regulation of vernalization responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.291; coverage=96.262; evalue=5.45e-35; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010582floral meristem determinacyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0030154cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.291; coverage=96.262; evalue=5.45e-35; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045893positive regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045944positive regulation of transcription by RNA polymerase IIBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.291; coverage=96.262; evalue=5.45e-35; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048316seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048437floral organ developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IDA:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048440carpel developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.436; coverage=84.579; evalue=9.72e-30; UniProt GO evidence=IEA:UniProtKB-ARBAUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048449floral organ formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IGI:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048455stamen formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048457floral whorl morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048459floral whorl structural organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048509regulation of meristem developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IGI:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048587regulation of short-day photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.028; coverage=99.533; evalue=2.16e-30; UniProt GO evidence=IGI:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048833specification of floral organ numberBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080060integument developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0080112seed growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=IMP:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000028regulation of photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000978RNA polymerase II cis-regulatory region sequence-specific DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000981DNA-binding transcription factor activity, RNA polymerase II-specificMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30; UniProt GO evidence=TAS:AgBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046983protein dimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G65050KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.291; coverage=96.262; evalue=5.45e-35UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G65060KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.919; coverage=92.523; evalue=2.73e-35UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G65080KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.028; coverage=99.533; evalue=2.16e-30UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0682200KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.659; coverage=85.047; evalue=4.91e-30UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsly:101268317KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.436; coverage=84.579; evalue=9.72e-30UniProtKB/Swiss-Prot DAT 2026 current_release