Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_011297`
Query reference	OH1004
Location	Chr02:162172598-162176644 (-)
Description	Similar to Agamous-like MADS-box protein AGL8 homolog (Solanum tuberosum OX%3D4113)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011297 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0215400`	Probable transcription factor involved in the development of floral organs.	leafy hull sterile1 is a homeotic mutation in a rice MADS box gene affecting rice flower development.2000 · DOI: 10.1105/tpc.12.6.871 Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepals.2001 · DOI: 10.1007/s004270100153 Conservation of the E-function for floral organ identity in rice revealed by the analysis of tissue culture-induced loss-of-function mutants of the OsMADS1 gene.2005 · DOI: 10.1007/s11103-005-2161-y Early flowering and reduced apical dominance result from ectopic expression of a rice MADS box gene.1994 · DOI: 10.1007/bf00013751
`UniProt: A2XDY1`	Probable transcription factor involved in the development of floral organs.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.633; coverage=106.522; evalue=2.12e-09; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006357	regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.633; coverage=106.522; evalue=2.12e-09; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010022	meristem determinacy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.412; coverage=83.152; evalue=6.42e-09; UniProt GO evidence=IGI:AgBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010093	specification of floral organ identity	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.412; coverage=83.152; evalue=6.42e-09; UniProt GO evidence=IMP:AgBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010582	floral meristem determinacy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.944; coverage=96.196; evalue=5.97e-09; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030154	cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.412; coverage=83.152; evalue=6.42e-09; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045944	positive regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.633; coverage=106.522; evalue=2.12e-09; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048509	regulation of meristem development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.412; coverage=83.152; evalue=6.42e-09; UniProt GO evidence=IGI:AgBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.633; coverage=106.522; evalue=2.12e-09; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.143; coverage=95.109; evalue=2.64e-09; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.633; coverage=106.522; evalue=2.12e-09; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.633; coverage=106.522; evalue=2.12e-09; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.412; coverage=83.152; evalue=6.42e-09; UniProt GO evidence=TAS:AgBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.143; coverage=95.109; evalue=2.64e-09; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008134	transcription factor binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.412; coverage=83.152; evalue=6.42e-09; UniProt GO evidence=TAS:AgBase	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046983	protein dimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.633; coverage=106.522; evalue=2.12e-09; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os03g0215400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=29.412; coverage=83.152; evalue=6.42e-09	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	sot:102577795	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=31.633; coverage=106.522; evalue=2.12e-09	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	vvi:100232952	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.944; coverage=96.196; evalue=5.97e-09	UniProtKB/Swiss-Prot DAT 2026 current_release