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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_011176
Query referenceOH1004
LocationChr02:159385284-159390344 (+)
DescriptionSimilar to TADA: tRNA(adenine(34)) deaminase%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011176 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g68720 Deaminates adenosines to inosines in tRNA-Arg(ACG).
Identification of the chloroplast adenosine-to-inosine tRNA editing enzyme.2009 · DOI: 10.1261/rna.1600609
Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation.2009 · DOI: 10.1105/tpc.109.066654

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0002100tRNA wobble adenosine to inosine editingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.267; coverage=32.895; evalue=3.73e-89; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010311lateral root formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.267; coverage=32.895; evalue=3.73e-89; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.267; coverage=32.895; evalue=3.73e-89; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.267; coverage=32.895; evalue=3.73e-89; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008251tRNA-specific adenosine deaminase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.267; coverage=32.895; evalue=3.73e-89; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.195; coverage=14.825; evalue=5.1e-33; UniProt GO evidence=IEA:UniProtKB-UniRuleUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.267; coverage=32.895; evalue=3.73e-89; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0052717tRNA-specific adenosine-34 deaminase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.267; coverage=32.895; evalue=3.73e-89; UniProt GO evidence=IEA:UniProtKB-ECUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G68720KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=52.267; coverage=32.895; evalue=3.73e-89UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGbsu:BSU00180KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=43.195; coverage=14.825; evalue=5.1e-33UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsav:SAV0558KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=40.884; coverage=15.877; evalue=1.82e-31UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGstm:STM2568KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.583; coverage=16.842; evalue=1.87e-30UniProtKB/Swiss-Prot DAT 2026 current_release