Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_011137`
Query reference	OH1004
Location	Chr02:158682319-158687762 (+)
Description	Similar to At1g13580: LAG1 longevity assurance homolog 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011137 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13580`	Essential for plant growth, promotes cell division in root meristems.	Disruption of the ceramide synthase LOH1 causes spontaneous cell death in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1469-8137.2011.03852.x Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005143 Overexpression of Arabidopsis Ceramide Synthases Differentially Affects Growth, Sphingolipid Metabolism, Programmed Cell Death, and Mycotoxin Resistance.2015 · DOI: 10.1104/pp.15.00987 Substrate specificity, kinetic properties and inhibition by fumonisin B1 of ceramide synthase isoforms from Arabidopsis.2016 · DOI: 10.1042/bj20150824
`At3g25540`	Essential for plant growth, promotes cell division in root meristems.	Disruption of the ceramide synthase LOH1 causes spontaneous cell death in Arabidopsis thaliana.2011 · DOI: 10.1111/j.1469-8137.2011.03852.x Unsaturation of very-long-chain ceramides protects plant from hypoxia-induced damages by modulating ethylene signaling in Arabidopsis.2015 · DOI: 10.1371/journal.pgen.1005143 Overexpression of Arabidopsis Ceramide Synthases Differentially Affects Growth, Sphingolipid Metabolism, Programmed Cell Death, and Mycotoxin Resistance.2015 · DOI: 10.1104/pp.15.00987 Substrate specificity, kinetic properties and inhibition by fumonisin B1 of ceramide synthase isoforms from Arabidopsis.2016 · DOI: 10.1042/bj20150824

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0581300`	Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis.	No verified direct reference in this release
`Os02g0728300`	Mediates resistance to sphinganine-analog mycotoxins (SAMs) by restoring the sphingolipid biosynthesis.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006665	sphingolipid metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010256	endomembrane system organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042761	very long-chain fatty acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046513	ceramide biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000012	regulation of auxin polar transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005789	endoplasmic reticulum membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050291	sphingosine N-acyltransferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G13580	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.627; coverage=64.578; evalue=2.69e-145	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os02g0581300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=69.776; coverage=64.578; evalue=7.18e-133	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	sly:543781	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=69.434; coverage=63.855; evalue=8.08e-136	UniProtKB/Swiss-Prot DAT 2026 current_release