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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_011122
Query referenceOH1004
LocationChr02:158314094-158324886 (-)
DescriptionSimilar to AGO2: Protein argonaute 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_011122 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 3 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g31280 Involved in RNA-mediated post-transcriptional gene silencing (PTGS).
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide.2008 · DOI: 10.1016/j.cell.2008.02.034
The mechanism selecting the guide strand from small RNA duplexes is different among argonaute proteins.2008 · DOI: 10.1093/pcp/pcn043
NERD, a plant-specific GW protein, defines an additional RNAi-dependent chromatin-based pathway in Arabidopsis.2012 · DOI: 10.1016/j.molcel.2012.07.027
RH3 enhances antiviral defense by facilitating small RNA loading into Argonaute 2 at endoplasmic reticulum-chloroplast membrane contact sites.2025 · DOI: 10.1038/s41467-025-57296-6
At1g31290 Involved in RNA-mediated post-transcriptional gene silencing (PTGS). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0615700 Probably involved in the RNA silencing pathway. No verified direct reference in this release
Os04g0615800 Probably involved in the RNA silencing pathway. No verified direct reference in this release
Os03g0449200 Involved in the RNA silencing pathway.
Over-expression of rice OsAGO7 gene induces upward curling of the leaf blade that enhanced erect-leaf habit.2007 · DOI: 10.1007/s00425-006-0472-0
The small interfering RNA production pathway is required for shoot meristem initiation in rice.2007 · DOI: 10.1073/pnas.0704339104

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006417regulation of translationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031047regulatory ncRNA-mediated gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035195miRNA-mediated post-transcriptional gene silencingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042742defense response to bacteriumBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051607defense response to virusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005783endoplasmic reticulumCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1990904ribonucleoprotein complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003723RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003729mRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004521RNA endonuclease activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035197siRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G31280KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=43.584; coverage=53.217; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G31290KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=45.006; coverage=46.896; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os04g0615700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=41.769; coverage=50.395; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release