Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_010977 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:156030672-156037943 (+) |
| Description | Similar to EMB2279: Pentatricopeptide repeat-containing protein At1g30610%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_010977 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At1g30610 |
May play a role in embryogenesis. | No verified direct reference in this release |
At5g67570 |
Involved in the regulation of early chloroplast development and chloroplast gene expression in a SIGF-dependent manner. | No verified direct reference in this release |
At1g28590 |
GDSL esterase/lipase At1g28590. | No verified direct reference in this release |
At1g28580 |
GDSL esterase/lipase At1g28580. | No verified direct reference in this release |
At1g28570 |
GDSL esterase/lipase At1g28570. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0005976 | polysaccharide metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.138; coverage=29.526; evalue=5.67e-100; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009658 | chloroplast organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=48.731; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=48.731; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010239 | chloroplast mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=48.731; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016042 | lipid catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.57; coverage=29.526; evalue=6.43e-105; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042793 | plastid transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.986; coverage=43.401; evalue=1.47e-116; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000325 | plant-type vacuole | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.138; coverage=29.526; evalue=5.67e-100; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.57; coverage=29.526; evalue=6.43e-105; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.138; coverage=29.526; evalue=5.67e-100; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=48.731; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=48.731; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016788 | hydrolase activity, acting on ester bonds | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.57; coverage=29.526; evalue=6.43e-105; UniProt GO evidence=IEA:InterPro | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046555 | acetylxylan esterase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.138; coverage=29.526; evalue=5.67e-100; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G28570 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=48.433; coverage=29.695; evalue=1.01e-99 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G28580 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=48.138; coverage=29.526; evalue=5.67e-100 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G28590 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.57; coverage=29.526; evalue=6.43e-105 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT1G30610 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.556; coverage=48.731; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G67570 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.986; coverage=43.401; evalue=1.47e-116 | UniProtKB/Swiss-Prot DAT 2026 current_release |