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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_010707
Query referenceOH1004
LocationChr02:151911853-151915264 (-)
DescriptionSimilar to PRD3: Putative recombination initiation defects 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_010707 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g01690 Involved in DNA cleavage that forms the double-strand breaks (DSB) that initiate meiotic recombination.
A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana.2009 · DOI: 10.1371/journal.pgen.1000654

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0106300 Involved in spore formation.
The novel gene HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS1 of rice encodes a putative coiled-coil protein required for homologous chromosome pairing in meiosis.2004 · DOI: 10.1105/tpc.020701

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009553embryo sac developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.526; coverage=113.365; evalue=3.07e-60; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009554megasporogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.721; coverage=113.842; evalue=1.07e-22; UniProt GO evidence=IDA:GrameneUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009555pollen developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.526; coverage=113.365; evalue=3.07e-60; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009556microsporogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.526; coverage=113.365; evalue=3.07e-60; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042138meiotic DNA double-strand break formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.526; coverage=113.365; evalue=3.07e-60; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051026chiasma assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.526; coverage=113.365; evalue=3.07e-60; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0070192chromosome organization involved in meiotic cell cycleBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.721; coverage=113.842; evalue=1.07e-22; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.526; coverage=113.365; evalue=3.07e-60; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G01690KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=34.526; coverage=113.365; evalue=3.07e-60UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os03g0106300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.721; coverage=113.842; evalue=1.07e-22UniProtKB/Swiss-Prot DAT 2026 current_release