Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_010420 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:146331991-146337307 (-) |
| Description | Similar to RMA2: E3 ubiquitin-protein ligase RMA2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_010420 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g28270 |
E3 ubiquitin-protein ligase that promotes the ubiquitination and proteasomal degradation of the auxin-binding protein ERABP1. | |
At4g27470 |
E3 ubiquitin-protein ligase. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009617 | response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.037; coverage=20.037; evalue=3.32e-18; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010507 | negative regulation of autophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.037; coverage=20.037; evalue=3.32e-18; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030163 | protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031648 | protein destabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.037; coverage=20.037; evalue=3.32e-18; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036503 | ERAD pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0055085 | transmembrane transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070534 | protein K63-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070936 | protein K48-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071456 | cellular response to hypoxia | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.414; coverage=18.367; evalue=1.57e-18; UniProt GO evidence=HEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904380 | endoplasmic reticulum mannose trimming | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:2000785 | regulation of autophagosome assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.037; coverage=20.037; evalue=3.32e-18; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.414; coverage=18.367; evalue=1.57e-18; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005789 | endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.037; coverage=20.037; evalue=3.32e-18; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031966 | mitochondrial membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044322 | endoplasmic reticulum quality control compartment | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=IEA:GOC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042802 | identical protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=IPI:IntAct | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044390 | ubiquitin-like protein conjugating enzyme binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044877 | protein-containing complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G27470 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.414; coverage=18.367; evalue=1.57e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT4G28270 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.105; coverage=17.625; evalue=5.54e-21 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:6048 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=37.963; coverage=20.037; evalue=9.82e-19 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:54197 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=37.037; coverage=20.037; evalue=3.32e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:407784 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=37.037; coverage=20.037; evalue=3.32e-18 | UniProtKB/Swiss-Prot DAT 2026 current_release |