Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_010412 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:146211333-146213007 (+) |
| Description | Similar to PSRP2: 30S ribosomal protein 2%2C chloroplastic (Spinacia oleracea OX%3D3562) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_010412 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 22 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g52150 |
Component of the chloroplast ribosome (chloro-ribosome), a dedicated translation machinery responsible for the synthesis of chloroplast genome-encoded proteins, including proteins of the transcription and translation machinery and components of the photosynthetic apparatus. | |
At3g52380 |
Could be involved in splicing and/or processing of chloroplast RNAs. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.458; coverage=59.866; evalue=4.27e-43; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009409 | response to cold | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009414 | response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009651 | response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010029 | regulation of seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031425 | chloroplast RNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.458; coverage=59.866; evalue=4.27e-43; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0080148 | negative regulation of response to water deprivation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900140 | regulation of seedling development | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901001 | negative regulation of response to salt stress | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1901259 | chloroplast rRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.138; coverage=60.535; evalue=8e-96; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005840 | ribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.138; coverage=60.535; evalue=8e-96; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.138; coverage=60.535; evalue=8e-96; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009579 | thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009941 | chloroplast envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990904 | ribonucleoprotein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.138; coverage=60.535; evalue=8e-96; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.138; coverage=60.535; evalue=8e-96; UniProt GO evidence=IEA:TreeGrafter | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019843 | rRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=75.138; coverage=60.535; evalue=8e-96; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G52150 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=69.744; coverage=65.217; evalue=1.04e-94 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G52380 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=42.458; coverage=59.866; evalue=4.27e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release |