Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_010335 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:144453877-144455469 (+) |
| Description | Similar to PTF2: Plant-specific TFIIB-related protein PTF2 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_010335 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 2 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g35540 |
Plant-specific TFIIB-related protein that plays important roles in pollen germination and embryogenesis, possibly by regulating gene expression through interaction with TBP2 and the subunits of RNA polymerases. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0001112 | DNA-templated transcription open complex formation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006352 | DNA-templated transcription initiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006359 | regulation of transcription by RNA polymerase III | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006383 | transcription by RNA polymerase III | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006384 | transcription initiation at RNA polymerase III promoter | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=22.822; coverage=45.472; evalue=1.36e-07; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009793 | embryo development ending in seed dormancy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009846 | pollen germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070898 | RNA polymerase III preinitiation complex assembly | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000126 | transcription factor TFIIIB complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097550 | transcription preinitiation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000994 | RNA polymerase III core binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000995 | RNA polymerase III general transcription initiation factor activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001006 | RNA polymerase III type 3 promoter sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001093 | TFIIB-class transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0001156 | TFIIIC-class transcription factor complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003690 | double-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017025 | TBP-class protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042803 | protein homodimerization activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IPI:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070063 | RNA polymerase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G35540 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=41.22; coverage=102.075; evalue=2.92e-110 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YGR246C | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=21.163; coverage=81.132; evalue=1.27e-08 | UniProtKB/Swiss-Prot DAT 2026 current_release |