Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_010032 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:138528172-138530971 (-) |
| Description | Similar to UPL5: E3 ubiquitin-protein ligase UPL5 (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_010032 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 46 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At4g12570 |
E3 ubiquitin protein ligase that regulates leaf senescence through ubiquitination and subsequent degradation of WRKY53. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006284 | base-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006513 | protein monoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007030 | Golgi organization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0007249 | canonical NF-kappaB signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009753 | response to jasmonic acid | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010150 | leaf senescence | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010637 | negative regulation of mitochondrial fusion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030154 | cell differentiation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031398 | positive regulation of protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032922 | circadian regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035357 | peroxisome proliferator activated receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035359 | negative regulation of peroxisome proliferator activated receptor signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042542 | response to hydrogen peroxide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IEP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042742 | defense response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043124 | negative regulation of canonical NF-kappaB signal transduction | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.145; coverage=33.014; evalue=1.13e-42; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061025 | membrane fusion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070936 | protein K48-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0141198 | protein branched polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1903955 | positive regulation of protein targeting to mitochondrion | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.775; coverage=36.124; evalue=1e-43; UniProt GO evidence=HMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1905091 | positive regulation of type 2 mitophagy | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000139 | Golgi membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005576 | extracellular region | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.775; coverage=36.124; evalue=1e-43; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.775; coverage=36.124; evalue=1e-43; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031965 | nuclear membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.775; coverage=36.124; evalue=1e-43; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034774 | secretory granule lumen | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.775; coverage=36.124; evalue=1e-43; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070062 | extracellular exosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.775; coverage=36.124; evalue=1e-43; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097225 | sperm midpiece | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097228 | sperm principal piece | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097229 | sperm end piece | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.775; coverage=36.124; evalue=1e-43; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030246 | carbohydrate binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0034450 | ubiquitin-ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140852 | histone ubiquitin ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT4G12570 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.091; coverage=86.364; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:10075 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=33.775; coverage=36.124; evalue=1e-43 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:59026 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=33.775; coverage=36.124; evalue=9.75e-44 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ncr:NCU08501 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=35.145; coverage=33.014; evalue=1.13e-42 | UniProtKB/Swiss-Prot DAT 2026 current_release |