Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_009521 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:128152136-128154293 (+) |
| Description | Similar to jmjd4: 2-oxoglutarate and iron-dependent oxygenase JMJD4 (Danio rerio OX%3D7955) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009521 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g63080 |
Histone demethylase that demethylates 'Arg-3' (H4R3me) of histone H4 with a specific activity for H4R3me2. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0009740 | gibberellic acid mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010030 | positive regulation of seed germination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010099 | regulation of photomorphogenesis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010114 | response to red light | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010476 | gibberellin mediated signaling pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IMP:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0017185 | peptidyl-lysine hydroxylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.569; coverage=72.516; evalue=2.29e-71; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0018126 | protein hydroxylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.728; coverage=73.15; evalue=2.97e-77; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0040029 | epigenetic regulation of gene expression | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045905 | positive regulation of translational termination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.569; coverage=72.516; evalue=2.29e-71; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000987 | cis-regulatory region sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016706 | 2-oxoglutarate-dependent dioxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033746 | histone H3R2 demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033749 | histone H4R3 demethylase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043565 | sequence-specific DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0106156 | peptidyl-lysine 4-dioxygenase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.728; coverage=73.15; evalue=2.97e-77; UniProt GO evidence=IEA:RHEA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G63080 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.579; coverage=98.52; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dre:767690 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=38.728; coverage=73.15; evalue=2.97e-77 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | gga:420400 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=38.182; coverage=69.767; evalue=1.02e-72 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:65094 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.569; coverage=72.516; evalue=2.29e-71 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:194952 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.981; coverage=87.104; evalue=5.25e-69 | UniProtKB/Swiss-Prot DAT 2026 current_release |