Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_009441 |
|---|---|
| Query reference | OH1004 |
| Location | Chr02:126670757-126672717 (-) |
| Description | Similar to APE1L: DNA-(apurinic or apyrimidinic site) endonuclease (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_009441 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 50 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g48425 |
Apurinic/apyrimidinic (AP) endonuclease involved in active DNA demethylation and gene imprinting. |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000723 | telomere maintenance | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006281 | DNA repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.782; coverage=92.602; evalue=1.48e-50; UniProt GO evidence=ISS:GeneDB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006284 | base-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.141; coverage=101.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006289 | nucleotide-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.782; coverage=92.602; evalue=1.48e-50; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006308 | DNA catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006310 | DNA recombination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009410 | response to xenobiotic stimulus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.895; coverage=58.163; evalue=8.78e-28; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0014912 | negative regulation of smooth muscle cell migration | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043488 | regulation of mRNA stability | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044029 | positive regulation of gene expression via chromosomal CpG island demethylation | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045454 | cell redox homeostasis | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0045944 | positive regulation of transcription by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070301 | cellular response to hydrogen peroxide | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071320 | cellular response to cAMP | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.895; coverage=58.163; evalue=8.78e-28; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0097698 | telomere maintenance via base-excision repair | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1900087 | positive regulation of G1/S transition of mitotic cell cycle | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904401 | cellular response to Thyroid stimulating hormone | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.895; coverage=58.163; evalue=8.78e-28; UniProt GO evidence=IEP:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.141; coverage=101.02; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005667 | transcription regulator complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.141; coverage=101.02; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=35.87; coverage=93.878; evalue=4.15e-60; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005813 | centrosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0048471 | perinuclear region of cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003677 | DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003684 | damaged DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003691 | double-stranded telomeric DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003713 | transcription coactivator activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.141; coverage=101.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004519 | endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.895; coverage=58.163; evalue=8.78e-28; UniProt GO evidence=ISO:RGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004521 | RNA endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004532 | RNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.782; coverage=92.602; evalue=1.48e-50; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008081 | phosphoric diester hydrolase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.141; coverage=101.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008296 | 3'-5'-DNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008309 | double-stranded DNA exodeoxyribonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008311 | double-stranded DNA 3'-5' DNA exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.141; coverage=101.02; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008408 | 3'-5' exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016491 | oxidoreductase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031490 | chromatin DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0033892 | deoxyribonuclease (pyrimidine dimer) activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044877 | protein-containing complex binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.141; coverage=101.02; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051059 | NF-kappaB binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0052720 | class II DNA-(apurinic or apyrimidinic site) endonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0090580 | phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140431 | DNA-(abasic site) binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT3G48425 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=64.141; coverage=101.02; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:11792 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=26.933; coverage=95.663; evalue=1.35e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | pfa:PF3D7_0305600 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.782; coverage=92.602; evalue=1.48e-50 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | rno:79116 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.895; coverage=58.163; evalue=8.78e-28 | UniProtKB/Swiss-Prot DAT 2026 current_release |