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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_008464
Query referenceOH1004
LocationChr02:100307729-100308420 (-)
DescriptionSimilar to CCMH: Cytochrome c-type biogenesis CcmH-like mitochondrial protein (Oryza sativa subsp. indica OX%3D39946)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_008464 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 8 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g15220 Plays a central role in mitochondrial cytochrome c maturation.
AtCCMH, an essential component of the c-type cytochrome maturation pathway in Arabidopsis mitochondria, interacts with apocytochrome c.2005 · DOI: 10.1073/pnas.0503473102
The three mitochondrial encoded CcmF proteins form a complex that interacts with CCMH and c-type apocytochromes in Arabidopsis.2008 · DOI: 10.1074/jbc.m802621200

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8AFK5 Plays a role in mitochondrial cytochrome c maturation. No verified direct reference in this release
Os02g0275100 Plays a role in mitochondrial cytochrome c maturation. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0009793embryo development ending in seed dormancyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.968; coverage=90.751; evalue=1.91e-69; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0017004cytochrome complex assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.026; coverage=89.017; evalue=1.67e-82; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.026; coverage=89.017; evalue=2.34e-82; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005743mitochondrial inner membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.026; coverage=89.017; evalue=1.67e-82; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.783; coverage=79.769; evalue=7.58e-18; UniProt GO evidence=IEA:TreeGrafterUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0032991protein-containing complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.026; coverage=89.017; evalue=1.67e-82; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016491oxidoreductase activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.026; coverage=89.017; evalue=1.67e-82; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=74.026; coverage=89.017; evalue=1.67e-82; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G15220KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=64.968; coverage=90.751; evalue=1.91e-69UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0275100KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=74.026; coverage=89.017; evalue=2.34e-82UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrcp:RCAP_rcc03137KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=33.333; coverage=62.428; evalue=1.06e-13UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGsme:SMc02364KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=34.783; coverage=79.769; evalue=7.58e-18UniProtKB/Swiss-Prot DAT 2026 current_release