Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_008272`
Query reference	OH1004
Location	Chr02:95268433-95271626 (+)
Description	Similar to EMF1: Protein EMBRYONIC FLOWER 1 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_008272 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 1 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g11530`	Transcription repressor that regulates phase transition during shoot, flower and seeds development.	Genetic interactions of the Arabidopsis flowering time gene FCA, with genes regulating floral initiation.1999 · DOI: 10.1046/j.1365-313x.1999.00364.x EMF1, a novel protein involved in the control of shoot architecture and flowering in Arabidopsis.2001 · DOI: 10.1105/tpc.010094 EMF genes maintain vegetative development by repressing the flower program in Arabidopsis.2003 · DOI: 10.1105/tpc.007831 EMBRYONIC FLOWER1 participates in polycomb group-mediated AG gene silencing in Arabidopsis.2008 · DOI: 10.1105/tpc.106.049957 Epigenetic regulation of gene programs by EMF1 and EMF2 in Arabidopsis.2010 · DOI: 10.1104/pp.109.143495 Temporal and spatial requirement of EMF1 activity for Arabidopsis vegetative and reproductive development.2009 · DOI: 10.1093/mp/ssp004 EMBRYONIC FLOWER1 and ULTRAPETALA1 Act Antagonistically on Arabidopsis Development and Stress Response.2013 · DOI: 10.1104/pp.112.213223 Genetic regulation of shoot development in Arabidopsis: role of the EMF genes.1995 · DOI: 10.1006/dbio.1995.1158 EMF genes regulate Arabidopsis inflorescence development.1997 · DOI: 10.1105/tpc.9.11.2011 EMF genes interact with late-flowering genes to regulate Arabidopsis shoot development.1998 · DOI: 10.1093/oxfordjournals.pcp.a029381 FLD interacts with genes that affect different developmental phase transitions to regulate Arabidopsis shoot development.1998 · DOI: 10.1046/j.1365-313x.1998.00204.x

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0009791	post-embryonic development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009909	regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009910	negative regulation of flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010022	meristem determinacy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042538	hyperosmotic salinity response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045814	negative regulation of gene expression, epigenetic	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045815	transcription initiation-coupled chromatin remodeling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048367	shoot system development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901000	regulation of response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003690	double-stranded DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003697	single-stranded DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G11530	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.678; coverage=6.133; evalue=9.59e-07	UniProtKB/Swiss-Prot DAT 2026 current_release