Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_008223`
Query reference	OH1004
Location	Chr02:92883174-92886135 (+)
Description	Similar to KAN4: Probable transcription factor KAN4 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_008223 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42630`	Probable transcription factor that regulates carpel integuments formation.	ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments.2006 · DOI: 10.1111/j.1365-313x.2006.02717.x A new dominant Arabidopsis transparent testa mutant, sk21-D, and modulation of seed flavonoid biosynthesis by KAN4.2010 · DOI: 10.1111/j.1467-7652.2010.00525.x
`At1g32240`	Probable transcription factor that regulates lateral organ polarity.	ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments.2006 · DOI: 10.1111/j.1365-313x.2006.02717.x KANADI and class III HD-Zip gene families regulate embryo patterning and modulate auxin flow during embryogenesis in Arabidopsis.2007 · DOI: 10.1105/tpc.106.047472
`At4g17695`	Probable transcription factor that regulates lateral organ polarity.	No verified direct reference in this release
`At5g16560`	Transcriptional repressor that regulates lateral organ polarity.	ABERRANT TESTA SHAPE encodes a KANADI family member, linking polarity determination to separation and growth of Arabidopsis ovule integuments.2006 · DOI: 10.1111/j.1365-313x.2006.02717.x KANADI and class III HD-Zip gene families regulate embryo patterning and modulate auxin flow during embryogenesis in Arabidopsis.2007 · DOI: 10.1105/tpc.106.047472 KANADI1 regulates adaxial-abaxial polarity in Arabidopsis by directly repressing the transcription of ASYMMETRIC LEAVES2.2008 · DOI: 10.1073/pnas.0803997105

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0395300`	Probable transcription factor that regulates abaxial identity during leaf development.	SHALLOT-LIKE1 is a KANADI transcription factor that modulates rice leaf rolling by regulating leaf abaxial cell development.2009 · DOI: 10.1105/tpc.108.061457

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009943	adaxial/abaxial axis specification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=84.286; coverage=19.943; evalue=5.74e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009944	polarity specification of adaxial/abaxial axis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.277; coverage=26.781; evalue=6.87e-34; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009956	radial pattern formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=84.286; coverage=19.943; evalue=5.74e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010051	xylem and phloem pattern formation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=84.286; coverage=19.943; evalue=5.74e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010158	abaxial cell fate specification	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010229	inflorescence development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=88.571; coverage=19.943; evalue=2.06e-33; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048440	carpel development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.277; coverage=26.781; evalue=6.87e-34; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048481	plant ovule development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080060	integument development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1905392	plant organ morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=84.286; coverage=19.943; evalue=5.74e-32; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.06; coverage=19.088; evalue=6.09e-34; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009505	plant-type cell wall	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G32240	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=71.277; coverage=26.781; evalue=6.87e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G17695	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=88.06; coverage=19.088; evalue=6.09e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G16560	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=84.286; coverage=19.943; evalue=5.74e-32	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G42630	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=40.401; coverage=99.43; evalue=1.35e-46	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os09g0395300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=88.571; coverage=19.943; evalue=2.06e-33	UniProtKB/Swiss-Prot DAT 2026 current_release