Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_007894`
Query reference	OH1004
Location	Chr02:71173028-71179073 (-)
Description	Similar to XLG3: Extra-large guanine nucleotide-binding protein 3 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_007894 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 29 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31930`	Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems (By similarity).	Arabidopsis extra-large G proteins (XLGs) regulate root morphogenesis.2008 · DOI: 10.1111/j.1365-313x.2007.03335.x Regulation of root-wave response by extra large and conventional G proteins in Arabidopsis thaliana.2008 · DOI: 10.1111/j.1365-313x.2008.03506.x
`At2g23460`	Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems (By similarity).	Arabidopsis extra-large G proteins (XLGs) regulate root morphogenesis.2008 · DOI: 10.1111/j.1365-313x.2007.03335.x
`At5g61070`	Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4).	Histone acetylation affects expression of cellular patterning genes in the Arabidopsis root epidermis.2005 · DOI: 10.1073/pnas.0503143102 HDA18 affects cell fate in Arabidopsis root epidermis via histone acetylation at four kinase genes.2013 · DOI: 10.1105/tpc.112.107045
`At5g61060`	Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4) (Probable).	Regulation of flowering time by the histone deacetylase HDA5 in Arabidopsis.2015 · DOI: 10.1111/tpj.12868
`At4g34390`	Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems (By similarity).	Arabidopsis extra-large G proteins (XLGs) regulate root morphogenesis.2008 · DOI: 10.1111/j.1365-313x.2007.03335.x Arabidopsis extra large G-protein 2 (XLG2) interacts with the Gbeta subunit of heterotrimeric G protein and functions in disease resistance.2009 · DOI: 10.1093/mp/ssp001 Ca2+-dependent GTPase, extra-large G protein 2 (XLG2), promotes activation of DNA-binding protein related to vernalization 1 (RTV1), leading to activation of floral integrator genes and early flowering in Arabidopsis.2012 · DOI: 10.1074/jbc.m111.317412

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006338	chromatin remodeling	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.174; coverage=17.885; evalue=5.59e-26; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0007188	adenylate cyclase-modulating G protein-coupled receptor signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009617	response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009908	flower development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010053	root epidermal cell differentiation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.174; coverage=17.885; evalue=5.59e-26; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034052	positive regulation of plant-type hypersensitive response	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.623; coverage=24.728; evalue=2.91e-21; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0040029	epigenetic regulation of gene expression	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042742	defense response to bacterium	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.623; coverage=24.728; evalue=2.91e-21; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045814	negative regulation of gene expression, epigenetic	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050793	regulation of developmental process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.174; coverage=17.885; evalue=5.59e-26; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050832	defense response to fungus	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.623; coverage=24.728; evalue=2.91e-21; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090558	plant epidermis development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.174; coverage=17.885; evalue=5.59e-26; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000280	regulation of root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IGI:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000118	histone deacetylase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005834	heterotrimeric G-protein complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.378; coverage=23.017; evalue=3.82e-38; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0071944	cell periphery	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.623; coverage=24.728; evalue=2.91e-21; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001664	G protein-coupled receptor binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003924	GTPase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004407	histone deacetylase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005525	GTP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031683	G-protein beta/gamma-subunit complex binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0141221	histone deacetylase activity, hydrolytic mechanism	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26; UniProt GO evidence=IEA:UniProtKB-EC	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G31930	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=72.956; coverage=24.728; evalue=2.74e-69	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G23460	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=53.378; coverage=23.017; evalue=3.82e-38	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G34390	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=39.623; coverage=24.728; evalue=2.91e-21	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G61060	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=60.825; coverage=15.086; evalue=5.45e-26	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G61070	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=52.174; coverage=17.885; evalue=5.59e-26	UniProtKB/Swiss-Prot DAT 2026 current_release