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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_007038
Query referenceOH1004
LocationChr02:34208821-34214813 (+)
DescriptionSimilar to LIG6: DNA ligase 6 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_007038 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 27 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g66730 DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair (Probable).
A plant DNA ligase is an important determinant of seed longevity.2010 · DOI: 10.1111/j.1365-313x.2010.04285.x
Agrobacterium T-DNA integration into the plant genome can occur without the activity of key non-homologous end-joining proteins.2015 · DOI: 10.1111/tpj.12779
At1g08130 Essential protein.
DNA ligase 1 deficient plants display severe growth defects and delayed repair of both DNA single and double strand breaks.2009 · DOI: 10.1186/1471-2229-9-79
DNA LIGASE I exerts a maternal effect on seed development in Arabidopsis thaliana.2010 · DOI: 10.1242/dev.041020

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0000012single strand break repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.125; coverage=47.365; evalue=4.02e-170; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0002237response to molecule of bacterial originBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006260DNA replicationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.125; coverage=47.365; evalue=4.02e-170; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006273lagging strand elongationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006281DNA repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006302double-strand break repairBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.125; coverage=47.365; evalue=4.02e-170; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006303double-strand break repair via nonhomologous end joiningBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006310DNA recombinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006979response to oxidative stressBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009409response to coldBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009845seed germinationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010225response to UV-CBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015074DNA integrationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048316seed developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051301cell divisionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.125; coverage=47.365; evalue=4.02e-170; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0071897DNA biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1903461Okazaki fragment processing involved in mitotic DNA replicationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.785; coverage=48.33; evalue=6.6e-163; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1904975response to bleomycinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IEP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000685positive regulation of cellular response to X-rayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005730nucleolusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.125; coverage=47.365; evalue=4.02e-170; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.65; coverage=48.404; evalue=1.24e-156; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.125; coverage=47.365; evalue=4.02e-170; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003910DNA ligase (ATP) activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046872metal ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G08130KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=40.125; coverage=47.365; evalue=4.02e-170UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G66730KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.656; coverage=106.31; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGddi:DDB_G0274493KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=39.785; coverage=48.33; evalue=6.6e-163UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdme:Dmel_CG5602KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.65; coverage=48.404; evalue=1.24e-156UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGxla:397978KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=39.538; coverage=48.255; evalue=1.46e-157UniProtKB/Swiss-Prot DAT 2026 current_release