Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_005652 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:170098764-170101778 (-) |
| Description | Similar to HRD1A: ERAD-associated E3 ubiquitin-protein ligase HRD1A (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_005652 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 28 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g16090 |
Probable component of the HRD1 ubiquitin ligase complex that mediates the rapid degradation of misfolded endoplasmic reticulum (ER) proteins, a process called ER-associated degradation (ERAD). | No verified direct reference in this release |
At1g65040 |
Probable component of the HRD1 ubiquitin ligase complex that mediates the rapid degradation of misfolded endoplasmic reticulum (ER) proteins, a process called ER-associated degradation (ERAD). | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os06g0301000 |
Probable component of the HRD1 ubiquitin ligase complex that mediates the rapid degradation of misfolded endoplasmic reticulum (ER) proteins, a process called ER-associated degradation (ERAD). | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.566; coverage=64.717; evalue=3.47e-92; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030970 | retrograde protein transport, ER to cytosol | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IMP:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036503 | ERAD pathway | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043161 | proteasome-mediated ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0050821 | protein stabilization | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.566; coverage=64.717; evalue=3.47e-92; UniProt GO evidence=IEA:UniProtKB-ARBA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070936 | protein K48-linked ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904276 | regulation of wax biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1904380 | endoplasmic reticulum mannose trimming | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000836 | Hrd1p ubiquitin ligase complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000839 | Hrd1p ubiquitin ligase ERAD-L complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005739 | mitochondrion | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.99; coverage=90.0; evalue=0.0; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005789 | endoplasmic reticulum membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005790 | smooth endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IDA:HPA | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0012505 | endomembrane system | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016020 | membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=HDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0036513 | Derlin-1 retrotranslocation complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IDA:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0044322 | endoplasmic reticulum quality control compartment | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=42.566; coverage=64.717; evalue=3.47e-92; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051082 | unfolded protein binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051087 | protein-folding chaperone binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051117 | ATPase binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0140297 | DNA-binding transcription factor binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IEA:Ensembl | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:1990381 | ubiquitin-specific protease binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92; UniProt GO evidence=IPI:ParkinsonsUK-UCL | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G65040 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=64.99; coverage=90.0; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G16090 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=63.928; coverage=94.151; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os06g0301000 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=61.328; coverage=96.604; evalue=0.0 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | hsa:84447 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=43.881; coverage=63.208; evalue=3.75e-92 | UniProtKB/Swiss-Prot DAT 2026 current_release |