Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_005158`
Query reference	OH1004
Location	Chr01:156746806-156750112 (+)
Description	Similar to RER4: Protein RETICULATA-RELATED 4%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_005158 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 17 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g12470`	May play a role in leaf development.	No verified direct reference in this release
`At2g40400`	May play a role in leaf development.	Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family.2013 · DOI: 10.1104/pp.113.217323
`At3g56140`	May play a role in leaf development.	Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family.2013 · DOI: 10.1104/pp.113.217323
`At5g22790`	May play a role in leaf development.	Functional Redundancy and Divergence within the Arabidopsis RETICULATA-RELATED Gene Family.2013 · DOI: 10.1104/pp.113.217323
`At2g37860`	May play a role in leaf development.	The lower cell density of leaf parenchyma in the Arabidopsis thaliana mutant lcd1-1 is associated with increased sensitivity to ozone and virulent Pseudomonas syringae.2003 · DOI: 10.1046/j.1365-313x.2003.01795.x Mutations in the RETICULATA gene dramatically alter internal architecture but have little effect on overall organ shape in Arabidopsis leaves.2006 · DOI: 10.1093/jxb/erl063

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000302	response to reactive oxygen species	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.786; coverage=72.351; evalue=5.03e-29; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008652	amino acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.113; coverage=75.194; evalue=5.44e-52; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009648	photoperiodism	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.786; coverage=72.351; evalue=5.03e-29; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.786; coverage=72.351; evalue=5.03e-29; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009741	response to brassinosteroid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.77; coverage=75.194; evalue=3.15e-53; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015822	ornithine transport	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.769; coverage=73.902; evalue=1.43e-30; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0015995	chlorophyll biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.77; coverage=75.194; evalue=3.15e-53; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.786; coverage=72.351; evalue=5.03e-29; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0099402	plant organ development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.769; coverage=73.902; evalue=1.43e-30; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.113; coverage=75.194; evalue=5.44e-52; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005783	endoplasmic reticulum	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.786; coverage=72.351; evalue=5.03e-29; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.139; coverage=74.419; evalue=9.55e-157; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.139; coverage=74.419; evalue=9.55e-157; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009706	chloroplast inner membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.139; coverage=74.419; evalue=9.55e-157; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009941	chloroplast envelope	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.139; coverage=74.419; evalue=9.55e-157; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031969	chloroplast membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.77; coverage=75.194; evalue=3.15e-53; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000064	L-ornithine transmembrane transporter activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.769; coverage=73.902; evalue=1.43e-30; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G37860	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=31.786; coverage=72.351; evalue=5.03e-29	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G40400	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=36.77; coverage=75.194; evalue=3.15e-53	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G56140	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.113; coverage=75.194; evalue=5.44e-52	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G12470	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=70.139; coverage=74.419; evalue=9.55e-157	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G22790	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=30.769; coverage=73.902; evalue=1.43e-30	UniProtKB/Swiss-Prot DAT 2026 current_release