Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_004892 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:149696544-149697812 (-) |
| Description | Similar to ALY1: THO complex subunit 4A (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_004892 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g59950 |
Export adapter involved in nuclear export of spliced and unspliced mRNA. | No verified direct reference in this release |
At5g02530 |
Export adapter involved in nuclear export of spliced and unspliced mRNA. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0006397 | mRNA processing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006405 | RNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006406 | mRNA export from nucleus | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.757; coverage=100.0; evalue=4.08e-73; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008380 | RNA splicing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016071 | mRNA metabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051028 | mRNA transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000346 | transcription export complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.757; coverage=100.0; evalue=4.08e-73; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005654 | nucleoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.757; coverage=100.0; evalue=4.08e-73; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005730 | nucleolus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.757; coverage=100.0; evalue=4.08e-73; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005886 | plasma membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.459; coverage=70.656; evalue=1.65e-51; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.757; coverage=100.0; evalue=4.08e-73; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016607 | nuclear speck | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.507; coverage=106.564; evalue=1.46e-33; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0035145 | exon-exon junction complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0071013 | catalytic step 2 spliceosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003697 | single-stranded DNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=IDA:MGI | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003729 | mRNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.757; coverage=100.0; evalue=4.08e-73; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0062153 | C5-methylcytidine-containing RNA reader activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36; UniProt GO evidence=ISO:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT5G02530 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.459; coverage=70.656; evalue=1.65e-51 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G59950 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=56.757; coverage=100.0; evalue=4.08e-73 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:56009 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=44.643; coverage=64.865; evalue=2.92e-36 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | tgu:100190053 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=40.957; coverage=72.587; evalue=6.15e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | xla:734364 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.507; coverage=106.564; evalue=1.46e-33 | UniProtKB/Swiss-Prot DAT 2026 current_release |