Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_004522`
Query reference	OH1004
Location	Chr01:139137568-139138080 (-)
Description	Similar to TCP6: Transcription factor TCP6 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_004522 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 15 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g41030`	Transcription factor TCP6.	No verified direct reference in this release
`At5g23280`	Transcription factor TCP7.	No verified direct reference in this release
`At3g27010`	Transcription factor that binds to the site II motif (3'- TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes.	Internal telomeric repeats and 'TCP domain' protein-binding sites co-operate to regulate gene expression in Arabidopsis thaliana cycling cells.2003 · DOI: 10.1046/j.1365-313x.2003.01682.x Arabidopsis TCP20 links regulation of growth and cell division control pathways.2005 · DOI: 10.1073/pnas.0504039102
`At1g72010`	Transcription factor TCP22.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0194600`	Transcription activator.	DNA binding and dimerization specificity and potential targets for the TCP protein family.2002 · DOI: 10.1046/j.1365-313x.2002.01294.x PCF1 and PCF2 specifically bind to cis elements in the rice proliferating cell nuclear antigen gene.1997 · DOI: 10.1105/tpc.9.9.1607

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.87; coverage=40.588; evalue=8.21e-23; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.5; coverage=47.059; evalue=1.07e-22; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008361	regulation of cell size	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.407; coverage=34.706; evalue=3.6e-22; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009653	anatomical structure morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.407; coverage=34.706; evalue=3.6e-22; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042752	regulation of circadian rhythm	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.757; coverage=43.529; evalue=1.21e-22; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048578	positive regulation of long-day photoperiodism, flowering	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.757; coverage=43.529; evalue=1.21e-22; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1900056	negative regulation of leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.407; coverage=34.706; evalue=3.6e-22; UniProt GO evidence=IGI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.87; coverage=40.588; evalue=8.21e-23; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.407; coverage=34.706; evalue=3.6e-22; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.407; coverage=34.706; evalue=3.6e-22; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001216	DNA-binding transcription activator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.757; coverage=43.529; evalue=1.21e-22; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.407; coverage=34.706; evalue=3.6e-22; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.87; coverage=40.588; evalue=8.21e-23; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.87; coverage=40.588; evalue=8.21e-23; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140537	transcription regulator activator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.757; coverage=43.529; evalue=1.21e-22; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G72010	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=59.016; coverage=35.882; evalue=7.74e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G27010	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=64.407; coverage=34.706; evalue=3.6e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G23280	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=56.757; coverage=43.529; evalue=1.21e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G41030	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=52.5; coverage=47.059; evalue=1.07e-22	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os04g0194600	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=60.87; coverage=40.588; evalue=8.21e-23	UniProtKB/Swiss-Prot DAT 2026 current_release