Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_003677 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:93735697-93738719 (+) |
| Description | Similar to PYD2: Dihydropyrimidinase (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_003677 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 24 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At5g12200 |
Catalyzes the second step of the reductive pyrimidine degradation, the reversible hydrolytic ring opening of dihydropyrimidines. | |
At3g44260 |
Ubiquitous transcription factor required for a diverse set of processes. | No verified direct reference in this release |
At5g22250 |
Ubiquitous transcription factor required for a diverse set of processes. | No verified direct reference in this release |
At5g10960 |
Ubiquitous transcription factor required for a diverse set of processes. | No verified direct reference in this release |
At1g80780 |
Ubiquitous transcription factor required for a diverse set of processes. | No verified direct reference in this release |
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000288 | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0002213 | defense response to insect | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006208 | pyrimidine nucleobase catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006212 | uracil catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=IMP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009611 | response to wounding | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0019483 | beta-alanine biosynthetic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=IEA:UniProtKB-UniPathway | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042742 | defense response to bacterium | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0043562 | cellular response to nitrogen levels | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000932 | P-body | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005794 | Golgi apparatus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=ISM:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009536 | plastid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0012505 | endomembrane system | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030015 | CCR4-NOT core complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004157 | dihydropyrimidinase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=IGI:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004535 | poly(A)-specific ribonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008408 | 3'-5' exonuclease activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13; UniProt GO evidence=IDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0046872 | metal ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT1G80780 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=67.5; coverage=15.385; evalue=1.42e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G44260 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=77.5; coverage=15.385; evalue=2.89e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G10960 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=65.854; coverage=15.769; evalue=1.24e-10 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G12200 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=66.071; coverage=21.538; evalue=2.47e-17 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT5G22250 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=85.714; coverage=13.462; evalue=3.1e-13 | UniProtKB/Swiss-Prot DAT 2026 current_release |