Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

Download current result

Gene ID	`LXL04_002446`
Query reference	OH1004
Location	Chr01:48899389-48900734 (-)
Description	Similar to MYBS3: Transcription factor MYBS3 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002446 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g47390`	Transcriptional repressor.	A novel Arabidopsis MYB-like transcription factor, MYBH, regulates hypocotyl elongation by enhancing auxin accumulation.2013 · DOI: 10.1093/jxb/ert223 Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development.2014 · DOI: 10.1038/ncomms4767 A single-repeat MYB transcription repressor, MYBH, participates in regulation of leaf senescence in Arabidopsis.2015 · DOI: 10.1007/s11103-015-0321-2
`At5g61620`	Probable transcription factor involved in somatic embryogenesis.	Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.2016 · DOI: 10.1016/j.jplph.2016.02.012

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0561400`	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters.	Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression.2002 · DOI: 10.1105/tpc.001735 A novel MYBS3-dependent pathway confers cold tolerance in rice.2010 · DOI: 10.1104/pp.110.153015
`Os10g0562100`	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters.	Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression.2002 · DOI: 10.1105/tpc.001735
`UniProt: B8BI93`	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters.	No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000122	negative regulation of transcription by RNA polymerase II	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.027; coverage=63.14; evalue=1.18e-42; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.027; coverage=63.14; evalue=1.18e-42; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009646	response to absence of light	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009723	response to ethylene	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009739	response to gibberellin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009744	response to sucrose	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010150	leaf senescence	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0030307	positive regulation of cell growth	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.027; coverage=63.14; evalue=1.18e-42; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045892	negative regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.676; coverage=25.256; evalue=6.74e-34; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048366	leaf development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.027; coverage=63.14; evalue=1.18e-42; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048527	lateral root development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090697	post-embryonic plant organ morphogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0140964	intracellular auxin homeostasis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:2000377	regulation of reactive oxygen species metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.027; coverage=63.14; evalue=1.18e-42; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:EnsemblPlants	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=69.625; evalue=1.33e-40; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=46.774; coverage=63.481; evalue=4.84e-45; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G47390	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.027; coverage=63.14; evalue=1.18e-42	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G61620	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=41.176; coverage=69.625; evalue=1.33e-40	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os10g0562100	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.676; coverage=25.256; evalue=6.74e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4349391	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=75.676; coverage=25.256; evalue=6.74e-34	UniProtKB/Swiss-Prot DAT 2026 current_release