Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_002430`
Query reference	OH1004
Location	Chr01:48548442-48550010 (-)
Description	Similar to PAO5: Probable polyamine oxidase 5 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_002430 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 22 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g29720`	Flavoenzyme involved in polyamine back-conversion.	A plant spermine oxidase/dehydrogenase regulated by the proteasome and polyamines.2014 · DOI: 10.1093/jxb/eru016 Polyamine Oxidase5 Regulates Arabidopsis Growth through Thermospermine Oxidase Activity.2014 · DOI: 10.1104/pp.114.242610 Reducing Cytoplasmic Polyamine Oxidase Activity in Arabidopsis Increases Salt and Drought Tolerance by Reducing Reactive Oxygen Species Production and Increasing Defense Gene Expression.2016 · DOI: 10.3389/fpls.2016.00214 The Arabidopsis polyamine oxidase/dehydrogenase 5 interferes with cytokinin and auxin signaling pathways to control xylem differentiation.2017 · DOI: 10.1093/jxb/erw510

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0710200`	Flavoenzyme involved in polyamine back-conversion.	Oryza sativa polyamine oxidase 1 back-converts tetraamines, spermine and thermospermine, to spermidine.2014 · DOI: 10.1007/s00299-013-1518-y

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006596	polyamine biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.007; coverage=105.939; evalue=1.33e-65; UniProt GO evidence=TAS:Reactome	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006598	polyamine catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.014; coverage=106.513; evalue=5.58e-67; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006805	xenobiotic metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.007; coverage=105.939; evalue=1.33e-65; UniProt GO evidence=TAS:Reactome	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009446	putrescine biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.645; coverage=102.49; evalue=7.07e-66; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009447	putrescine catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.645; coverage=102.49; evalue=7.07e-66; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046203	spermidine catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.645; coverage=102.49; evalue=7.07e-66; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046208	spermine catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1901307	positive regulation of spermidine biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.645; coverage=102.49; evalue=7.07e-66; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1903602	thermospermine catabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.336; coverage=104.981; evalue=7.02e-141; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.014; coverage=106.513; evalue=5.58e-67; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.014; coverage=106.513; evalue=5.58e-67; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005737	cytoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005782	peroxisomal matrix	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.645; coverage=102.49; evalue=7.07e-66; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005829	cytosol	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.014; coverage=106.513; evalue=5.58e-67; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031965	nuclear membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.014; coverage=106.513; evalue=5.58e-67; UniProt GO evidence=ISO:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0046592	polyamine oxidase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0050660	flavin adenine dinucleotide binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.336; coverage=104.981; evalue=7.02e-141; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052901	spermine oxidase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0; UniProt GO evidence=IEA:RHEA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0052903	N(1)-acetylpolyamine oxidase (3-acetamidopropanal-forming) activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0; UniProt GO evidence=IEA:RHEA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990534	thermospermine oxidase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G29720	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=55.935; coverage=106.513; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0710200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.336; coverage=104.981; evalue=7.02e-141	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	hsa:54498	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.007; coverage=105.939; evalue=1.33e-65	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:212503	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=33.645; coverage=102.49; evalue=7.07e-66	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mmu:228608	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=32.014; coverage=106.513; evalue=5.58e-67	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4327828	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.336; coverage=104.981; evalue=7.02e-141	UniProtKB/Swiss-Prot DAT 2026 current_release