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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_001882
Query referenceOH1004
LocationChr01:35954911-35957038 (-)
DescriptionSimilar to BBX21: B-box zinc finger protein 21 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001882 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 25 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g75540 Transcription activator that acts as a positive regulator of seedling photomorphogenesis.
SALT TOLERANCE HOMOLOG2, a B-box protein in Arabidopsis that activates transcription and positively regulates light-mediated development.2007 · DOI: 10.1105/tpc.107.054791
At4g39070 Acts as a positive regulator of seedling photomorphogenesis. No verified direct reference in this release
At1g78600 Acts as a positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21.
LZF1, a HY5-regulated transcriptional factor, functions in Arabidopsis de-etiolation.2008 · DOI: 10.1111/j.1365-313x.2008.03401.x
The common function of a novel subfamily of B-Box zinc finger proteins with reference to circadian-associated events in Arabidopsis thaliana.2008 · DOI: 10.1271/bbb.80041
LZF1/SALT TOLERANCE HOMOLOG3, an Arabidopsis B-box protein involved in light-dependent development and gene expression, undergoes COP1-mediated ubiquitination.2008 · DOI: 10.1105/tpc.108.061747
COP1-mediated degradation of BBX22/LZF1 optimizes seedling development in Arabidopsis.2011 · DOI: 10.1104/pp.111.175042
At1g06040 Acts as a negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation.
Nuclear localization and interaction with COP1 are required for STO/BBX24 function during photomorphogenesis.2011 · DOI: 10.1104/pp.111.180208
Arabidopsis STO/BBX24 negatively regulates UV-B signaling by interacting with COP1 and repressing HY5 transcriptional activity.2012 · DOI: 10.1038/cr.2012.34
The Arabidopsis B-BOX protein BBX25 interacts with HY5, negatively regulating BBX22 expression to suppress seedling photomorphogenesis.2013 · DOI: 10.1105/tpc.113.109751
At2g31380 Acts as a negative regulator of seedling photomorphogenesis.
The Arabidopsis B-BOX protein BBX25 interacts with HY5, negatively regulating BBX22 expression to suppress seedling photomorphogenesis.2013 · DOI: 10.1105/tpc.113.109751

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009416response to light stimulusBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=34.375; evalue=6.2e-38; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009640photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009641shade avoidanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009658chloroplast organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.692; coverage=32.5; evalue=4.24e-39; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009718anthocyanin-containing compound biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.692; coverage=32.5; evalue=4.24e-39; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009741response to brassinosteroidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.961; coverage=63.75; evalue=7.77e-55; UniProt GO evidence=IEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010100negative regulation of photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.046; coverage=34.062; evalue=1.43e-33; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010117photoprotectionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010228vegetative to reproductive phase transition of meristemBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=34.375; evalue=6.2e-38; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015995chlorophyll biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.692; coverage=32.5; evalue=4.24e-39; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048573photoperiodism, floweringBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=34.375; evalue=6.2e-38; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090351seedling developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=34.375; evalue=6.2e-38; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1900458negative regulation of brassinosteroid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.961; coverage=63.75; evalue=7.77e-55; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1902448positive regulation of shade avoidanceBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=34.375; evalue=6.2e-38; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:1905157positive regulation of photosynthesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:2000306positive regulation of photomorphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.961; coverage=63.75; evalue=7.77e-55; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.692; coverage=32.5; evalue=4.24e-39; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000976transcription cis-regulatory region bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=IPI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=34.375; evalue=6.2e-38; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003712transcription coregulator activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=34.375; evalue=6.2e-38; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008270zinc ion bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G06040KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.091; coverage=34.375; evalue=6.2e-38UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G75540KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=47.788; coverage=70.625; evalue=1.49e-61UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G78600KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=57.692; coverage=32.5; evalue=4.24e-39UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G31380KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=55.046; coverage=34.062; evalue=1.43e-33UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G39070KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=51.961; coverage=63.75; evalue=7.77e-55UniProtKB/Swiss-Prot DAT 2026 current_release