Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_001578`
Query reference	OH1004
Location	Chr01:29359238-29362678 (+)
Description	Similar to PGDH1: D-3-phosphoglycerate dehydrogenase 1%2C chloroplastic (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001578 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34200`	Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB).	Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.2013 · DOI: 10.1104/pp.113.226720 Arabidopsis phosphoglycerate dehydrogenase1 of the phosphoserine pathway is essential for development and required for ammonium assimilation and tryptophan biosynthesis.2013 · DOI: 10.1105/tpc.113.118992
`At3g19480`	Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB).	No verified direct reference in this release
`At1g17745`	Involved in the plastidial phosphorylated pathway of serine biosynthesis (PPSB).	Functional characterization of the plastidial 3-phosphoglycerate dehydrogenase family in Arabidopsis.2013 · DOI: 10.1104/pp.113.226720 Regulation of serine biosynthesis in Arabidopsis. Crucial role of plastidic 3-phosphoglycerate dehydrogenase in non-photosynthetic tissues.1999 · DOI: 10.1074/jbc.274.1.397

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000096	sulfur amino acid metabolic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006564	L-serine biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009555	pollen development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009561	megagametogenesis	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009643	photosynthetic acclimation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=81.305; coverage=88.18; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.298; coverage=84.137; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005886	plasma membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009536	plastid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009570	chloroplast stroma	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003954	NADH dehydrogenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=81.305; coverage=88.18; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004617	phosphoglycerate dehydrogenase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005524	ATP binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051287	NAD binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G17745	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=79.298; coverage=84.137; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G19480	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=81.305; coverage=88.18; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT4G34200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=82.403; coverage=91.913; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mja:MJ_1018	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.22; coverage=84.137; evalue=6.18e-131	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	mth:MTH_970	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=38.447; coverage=84.137; evalue=1.33e-120	UniProtKB/Swiss-Prot DAT 2026 current_release