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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_001465
Query referenceOH1004
LocationChr01:27245499-27247055 (+)
DescriptionSimilar to DRB7: Double-stranded RNA-binding protein 7 (Oryza sativa subsp. japonica OX%3D39947)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_001465 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 20 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g09700 Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS).
A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin.2000 · DOI: 10.1105/tpc.12.12.2351
The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation.2004 · DOI: 10.1073/pnas.0307969100
The nuclear dsRNA binding protein HYL1 is required for microRNA accumulation and plant development, but not posttranscriptional transgene silencing.2004 · DOI: 10.1016/j.cub.2004.01.035
Specific interactions between Dicer-like proteins and HYL1/DRB-family dsRNA-binding proteins in Arabidopsis thaliana.2005 · DOI: 10.1007/s11103-004-6853-5
The interaction between DCL1 and HYL1 is important for efficient and precise processing of pri-miRNA in plant microRNA biogenesis.2006 · DOI: 10.1261/rna.2146906
SERRATE is a novel nuclear regulator in primary microRNA processing in Arabidopsis.2006 · DOI: 10.1111/j.1365-313x.2006.02835.x
The N-terminal double-stranded RNA binding domains of Arabidopsis HYPONASTIC LEAVES1 are sufficient for pre-microRNA processing.2007 · DOI: 10.1105/tpc.106.048637
The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.2008 · DOI: 10.1073/pnas.0803356105
Gene structures and processing of Arabidopsis thaliana HYL1-dependent pri-miRNAs.2009 · DOI: 10.1093/nar/gkp189
The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.2009 · DOI: 10.1261/rna.1646909
Structure of Arabidopsis HYPONASTIC LEAVES1 and its molecular implications for miRNA processing.2010 · DOI: 10.1016/j.str.2010.02.006
At3g26932 Binds double-stranded RNA. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os11g0109900 Binds double-stranded RNA. No verified direct reference in this release
Os12g0109900 Binds double-stranded RNA. No verified direct reference in this release
Os05g0307400 Binds double-stranded RNA. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006396RNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.908; coverage=67.812; evalue=9.03e-77; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009733response to auxinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009735response to cytokininBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009737response to abscisic acidBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010267ta-siRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010305leaf vascular tissue pattern formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010468regulation of gene expressionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.908; coverage=67.812; evalue=9.03e-77; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010589leaf proximal/distal pattern formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0031054pre-miRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035196miRNA processingBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035279miRNA-mediated gene silencing by mRNA destabilizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042659regulation of cell fate specificationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.908; coverage=67.812; evalue=9.03e-77; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009507chloroplastCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.737; coverage=59.375; evalue=3.94e-27; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010445nuclear dicing bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016607nuclear speckCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003725double-stranded RNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.908; coverage=67.812; evalue=9.03e-77; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0004525ribonuclease III activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.908; coverage=67.812; evalue=9.03e-77; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035198miRNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0042802identical protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76; UniProt GO evidence=IPI:IntActUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT1G09700KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=62.703; coverage=57.812; evalue=1.99e-76UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G26932KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=34.737; coverage=59.375; evalue=3.94e-27UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os05g0307400KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=59.459; coverage=69.375; evalue=3.11e-76UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os11g0109900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=59.908; coverage=67.812; evalue=9.03e-77UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os12g0109900KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=59.447; coverage=67.812; evalue=9.43e-77UniProtKB/Swiss-Prot DAT 2026 current_release