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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_000872
Query referenceOH1004
LocationChr01:15985858-15988294 (+)
DescriptionSimilar to RPT2A: 26S proteasome regulatory subunit 4 homolog A (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000872 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 37 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g29040 The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins.
The HALTED ROOT gene encoding the 26S proteasome subunit RPT2a is essential for the maintenance of Arabidopsis meristems.2004 · DOI: 10.1242/dev.01096
26S proteasome regulatory particle mutants have increased oxidative stress tolerance.2008 · DOI: 10.1111/j.1365-313x.2007.03322.x
Loss of 26S proteasome function leads to increased cell size and decreased cell number in Arabidopsis shoot organs.2009 · DOI: 10.1104/pp.109.135970
Regulation of leaf organ size by the Arabidopsis RPT2a 19S proteasome subunit.2009 · DOI: 10.1111/j.1365-313x.2009.03932.x
Control of endoreduplication of trichome by RPT2a, a subunit of the 19S proteasome in Arabidopsis.2010 · DOI: 10.1007/s10265-010-0321-x
Arabidopsis thaliana 26S proteasome subunits RPT2a and RPT5a are crucial for zinc deficiency-tolerance.2011 · DOI: 10.1271/bbb.100794
Arabidopsis RPT2a encoding the 26S proteasome subunit is required for various aspects of root meristem maintenance, and regulates gametogenesis redundantly with its homolog, RPT2b.2011 · DOI: 10.1093/pcp/pcr093
RPT2a, a 26S proteasome AAA-ATPase, is directly involved in Arabidopsis CC-NBS-LRR protein uni-1D-induced signaling pathways.2011 · DOI: 10.1093/pcp/pcr099
The RPT2 subunit of the 26S proteasome directs complex assembly, histone dynamics, and gametophyte and sporophyte development in Arabidopsis.2011 · DOI: 10.1105/tpc.111.089482
RPN1a, a 26S proteasome subunit, is required for innate immunity in Arabidopsis.2012 · DOI: 10.1111/j.1365-313x.2012.05048.x
Arabidopsis RPT2a, 19S proteasome subunit, regulates gene silencing via DNA methylation.2012 · DOI: 10.1371/journal.pone.0037086
Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation.2014 · DOI: 10.1021/pr401245g
At2g20140 The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins.
Arabidopsis RPT2a encoding the 26S proteasome subunit is required for various aspects of root meristem maintenance, and regulates gametogenesis redundantly with its homolog, RPT2b.2011 · DOI: 10.1093/pcp/pcr093
The RPT2 subunit of the 26S proteasome directs complex assembly, histone dynamics, and gametophyte and sporophyte development in Arabidopsis.2011 · DOI: 10.1105/tpc.111.089482

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0691800 The 26S proteasome is involved in the ATP-dependent degradation of ubiquitinated proteins. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006511ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=TAS:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0007292female gamete generationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009408response to heatBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009933meristem structural organizationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009965leaf morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010015root morphogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010078maintenance of root meristem identityBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010229inflorescence developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010311lateral root formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010498proteasomal protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.096; coverage=87.238; evalue=0.0; UniProt GO evidence=NAS:ComplexPortalUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0035266meristem growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043161proteasome-mediated ubiquitin-dependent protein catabolic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0043248proteasome assemblyBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045087innate immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048232male gamete generationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048364root developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048367shoot system developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048827phyllome developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048829root cap developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051788response to misfolded proteinBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0090351seedling developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000502proteasome complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0000932P-bodyCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005654nucleoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.096; coverage=87.238; evalue=0.0; UniProt GO evidence=TAS:ReactomeUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005737cytoplasmCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=92.188; coverage=93.724; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005739mitochondrionCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=94.619; coverage=93.305; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005829cytosolCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=94.619; coverage=93.305; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005838proteasome regulatory particleCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.096; coverage=87.238; evalue=0.0; UniProt GO evidence=IDA:FlyBaseUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=HDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0008540proteasome regulatory particle, base subcomplexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IDA:TIGRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.897; coverage=87.238; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0022624proteasome accessory complexCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.897; coverage=87.238; evalue=0.0; UniProt GO evidence=ISS:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005524ATP bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016887ATP hydrolysis activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0017025TBP-class protein bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.897; coverage=87.238; evalue=0.0; UniProt GO evidence=IPI:RGDUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0036402proteasome-activating activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G20140KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=94.619; coverage=93.305; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G29040KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=95.067; coverage=93.305; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdme:Dmel_CG5289KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=80.096; coverage=87.238; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os07g0691800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=92.188; coverage=93.724; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGrno:117263KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=78.897; coverage=87.238; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release