Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_000746`
Query reference	OH1004
Location	Chr01:13788733-13789525 (+)
Description	Similar to At1g62350: Pentatricopeptide repeat-containing protein At1g62350 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000746 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 16 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g62350`	Pentatricopeptide repeat-containing protein At1g62350.	No verified direct reference in this release
`At3g46870`	Binds weakly to specific single strand RNA (ssRNA).	Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition.2013 · DOI: 10.1074/jbc.m113.496828
`At3g27750`	Essential protein required during embryogenesis.	A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts.2012 · DOI: 10.1261/rna.032623.112 Structure of a PLS-class pentatricopeptide repeat protein provides insights into mechanism of RNA recognition.2013 · DOI: 10.1074/jbc.m113.496828
`At1g74850`	Involved in plastid gene expression.	pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression.2006 · DOI: 10.1105/tpc.105.036392
`At1g62910`	Pentatricopeptide repeat-containing protein At1g62910.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000373	Group II intron splicing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.31; coverage=73.109; evalue=6.39e-10; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006397	mRNA processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.31; coverage=73.109; evalue=6.39e-10; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009658	chloroplast organization	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.31; coverage=73.109; evalue=6.39e-10; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009793	embryo development ending in seed dormancy	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.31; coverage=73.109; evalue=6.39e-10; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042793	plastid transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=22.892; coverage=69.748; evalue=1.33e-06; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=22.892; coverage=69.748; evalue=1.33e-06; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090617	mitochondrial mRNA 5'-end processing	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.244; coverage=55.042; evalue=3.72e-06; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.44; coverage=80.252; evalue=1.49e-100; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005739	mitochondrion	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.882; coverage=99.58; evalue=4.35e-62; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009507	chloroplast	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.44; coverage=80.252; evalue=1.49e-100; UniProt GO evidence=ISM:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009535	chloroplast thylakoid membrane	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.31; coverage=73.109; evalue=6.39e-10; UniProt GO evidence=IEA:UniProtKB-SubCell	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042644	chloroplast nucleoid	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=22.892; coverage=69.748; evalue=1.33e-06; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003723	RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.31; coverage=73.109; evalue=6.39e-10; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003727	single-stranded RNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.882; coverage=99.58; evalue=4.35e-62; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.882; coverage=99.58; evalue=4.35e-62; UniProt GO evidence=HDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:1990825	sequence-specific mRNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.882; coverage=99.58; evalue=4.35e-62; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G62350	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=76.44; coverage=80.252; evalue=1.49e-100	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G62910	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=28.244; coverage=55.042; evalue=3.72e-06	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT1G74850	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=22.892; coverage=69.748; evalue=1.33e-06	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G27750	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=29.31; coverage=73.109; evalue=6.39e-10	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G46870	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=43.882; coverage=99.58; evalue=4.35e-62	UniProtKB/Swiss-Prot DAT 2026 current_release