Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_000625`
Query reference	OH1004
Location	Chr01:11337750-11340312 (+)
Description	Similar to DDB2: Protein DAMAGED DNA-BINDING 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000625 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 6 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58760`	May function as the substrate recognition module for a DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complex including DDB1A and CUL4 (By similarity).	Regulation and role of Arabidopsis CUL4-DDB1A-DDB2 in maintaining genome integrity upon UV stress.2008 · DOI: 10.1371/journal.pgen.1000093 The DDB1a interacting proteins ATCSA-1 and DDB2 are critical factors for UV-B tolerance and genomic integrity in Arabidopsis thaliana.2010 · DOI: 10.1111/j.1365-313x.2010.04157.x

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0141700`	Required for DNA repair.	Rice UV-damaged DNA binding protein homologues are most abundant in proliferating tissues.2003 · DOI: 10.1016/s0378-1119(03)00447-5

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0000209	protein polyubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.723; coverage=58.865; evalue=4.45e-39; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006281	DNA repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006289	nucleotide-excision repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.545; coverage=58.511; evalue=3.38e-45; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009411	response to UV	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0; UniProt GO evidence=IBA:GO_Central	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010224	response to UV-B	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0016567	protein ubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-UniPathway	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0034644	cellular response to UV	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.545; coverage=58.511; evalue=3.38e-45; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0051865	protein autoubiquitination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.723; coverage=58.865; evalue=4.45e-39; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0070914	UV-damage excision repair	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.723; coverage=58.865; evalue=4.45e-39; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005654	nucleoplasm	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.723; coverage=58.865; evalue=4.45e-39; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031464	Cul4A-RING E3 ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.545; coverage=58.511; evalue=3.38e-45; UniProt GO evidence=IEA:UniProtKB-ARBA	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0031465	Cul4B-RING E3 ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.723; coverage=58.865; evalue=4.45e-39; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090734	site of DNA damage	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.545; coverage=58.511; evalue=3.38e-45; UniProt GO evidence=ISS:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003684	damaged DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0004842	ubiquitin-protein transferase activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.723; coverage=58.865; evalue=4.45e-39; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0008270	zinc ion binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0044877	protein-containing complex binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.723; coverage=58.865; evalue=4.45e-39; UniProt GO evidence=IEA:Ensembl	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT5G58760	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=68.164; coverage=90.78; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	bta:519357	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=30.723; coverage=58.865; evalue=4.45e-39	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0141700	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.383; coverage=83.333; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	gga:423185	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.545; coverage=58.511; evalue=3.38e-45	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4325482	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=66.383; coverage=83.333; evalue=0.0	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	xtr:493565	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=32.716; coverage=57.447; evalue=9.13e-43	UniProtKB/Swiss-Prot DAT 2026 current_release