Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_000565 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:10378519-10380412 (-) |
| Description | Similar to PTAC16: Protein PLASTID TRANSCRIPTIONALLY ACTIVE 16%2C chloroplastic (Arabidopsis thaliana OX%3D3702) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_000565 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 14 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
At3g46780 |
Probably involved in the regulation of plastid gene expression. | No verified direct reference in this release |
At3g18890 |
Involved in protein precursor import into chloroplasts. | No verified direct reference in this release |
At2g34460 |
Uncharacterized protein At2g34460, chloroplastic. | No verified direct reference in this release |
Rice
| Reference gene ID | Possible function | Papers / DOI |
|---|---|---|
Os10g0100300 |
Involved in protein precursor import into chloroplasts. | No verified direct reference in this release |
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0007623 | circadian rhythm | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156; UniProt GO evidence=IEP:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0015031 | protein transport | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.571; coverage=52.883; evalue=1.21e-15; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005783 | endoplasmic reticulum | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.701; coverage=49.901; evalue=7.97e-06; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009507 | chloroplast | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009534 | chloroplast thylakoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009535 | chloroplast thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009570 | chloroplast stroma | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.571; coverage=52.883; evalue=1.21e-15; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009706 | chloroplast inner membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=28.571; coverage=52.883; evalue=1.21e-15; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0009941 | chloroplast envelope | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010287 | plastoglobule | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.701; coverage=49.901; evalue=7.97e-06; UniProt GO evidence=HDA:TAIR | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0042644 | chloroplast nucleoid | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0098572 | stromal side of plastid thylakoid membrane | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0098807 | chloroplast thylakoid membrane protein complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.682; coverage=52.485; evalue=2.46e-12; UniProt GO evidence=IDA:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | ath:AT2G34460 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=24.701; coverage=49.901; evalue=7.97e-06 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G18890 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=25.0; coverage=70.775; evalue=2.98e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | ath:AT3G46780 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=51.02; coverage=107.157; evalue=3.01e-156 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | dosa:Os10g0100300 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.682; coverage=52.485; evalue=2.46e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | osa:4347935 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=30.682; coverage=52.485; evalue=2.46e-12 | UniProtKB/Swiss-Prot DAT 2026 current_release |