Gene Annotation
Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.
Search Results
| Gene ID | LXL04_000480 |
|---|---|
| Query reference | OH1004 |
| Location | Chr01:8676656-8680340 (+) |
| Description | Similar to Cnot4: CCR4-NOT transcription complex subunit 4 (Mus musculus OX%3D10090) |
| Annotation source assembly | GCA_047496595.1_OSU_TarKok_2.0 |
Functional annotation source: OH1004 · LXL04_000480 · GCA_047496595.1_OSU_TarKok_2.0.
This query returns 23 GO annotations and 4 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.
Arabidopsis / Rice Reference Genes and Papers
Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.
Download references for this gene
Arabidopsis
No hit for this species in the current source table.
Rice
No hit for this species in the current source table.
GO / KEGG
These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.
| Type | ID | Name | Namespace | Evidence | Source |
|---|---|---|---|---|---|
| GO | GO:0000209 | protein polyubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.126; coverage=30.13; evalue=5.92e-60; UniProt GO evidence=NAS:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006351 | DNA-templated transcription | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006511 | ubiquitin-dependent protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0006513 | protein monoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0010498 | proteasomal protein catabolic process | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IGI:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0016567 | protein ubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031047 | regulatory ncRNA-mediated gene silencing | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.102; coverage=27.995; evalue=8.76e-47; UniProt GO evidence=EXP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0031087 | deadenylation-independent decapping of nuclear-transcribed mRNA | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IMP:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0032968 | positive regulation of transcription elongation by RNA polymerase II | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IDA:ComplexPortal | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0051865 | protein autoubiquitination | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0070966 | nuclear-transcribed mRNA catabolic process, no-go decay | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0120271 | negative regulation of nuclear mRNA surveillance of meiosis-specific transcripts | Biological Process | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.102; coverage=27.995; evalue=8.76e-47; UniProt GO evidence=IMP:PomBase | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005634 | nucleus | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=IEA:UniProtKB-SubCell | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005737 | cytoplasm | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IDA:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0005829 | cytosol | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=TAS:Reactome | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0022626 | cytosolic ribosome | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IDA:UniProt | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030014 | CCR4-NOT complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=IBA:GO_Central | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0030015 | CCR4-NOT core complex | Cellular Component | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48; UniProt GO evidence=IPI:SGD | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0003723 | RNA binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0004842 | ubiquitin-protein transferase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=ISS:UniProtKB | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0008270 | zinc ion binding | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=IEA:UniProtKB-KW | UniProtKB/Swiss-Prot DAT 2026 current_release |
| GO | GO:0061630 | ubiquitin protein ligase activity | Molecular Function | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60; UniProt GO evidence=IEA:UniProtKB-EC | UniProtKB/Swiss-Prot DAT 2026 current_release |
| KEGG | hsa:4850 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=42.126; coverage=30.13; evalue=5.92e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | mmu:53621 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=42.126; coverage=30.13; evalue=5.69e-60 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | sce:YER068W | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=37.453; coverage=31.673; evalue=4.92e-48 | UniProtKB/Swiss-Prot DAT 2026 current_release | |
| KEGG | spo:2542325 | KEGG gene cross-reference from reviewed UniProt hit; pathway name pending | Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=41.102; coverage=27.995; evalue=8.76e-47 | UniProtKB/Swiss-Prot DAT 2026 current_release |