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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_000398
Query referenceOH1004
LocationChr01:7398808-7400741 (-)
DescriptionSimilar to BHLH48: Transcription factor bHLH48 (Arabidopsis thaliana OX%3D3702)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000398 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 13 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g42300 Transcription factor bHLH48. No verified direct reference in this release
At3g57800 Transcription factor bHLH60. No verified direct reference in this release
At4g34530 Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro.
Photoexcited CRY2 interacts with CIB1 to regulate transcription and floral initiation in Arabidopsis.2008 · DOI: 10.1126/science.1163927
Multiple bHLH proteins form heterodimers to mediate CRY2-dependent regulation of flowering-time in Arabidopsis.2013 · DOI: 10.1371/journal.pgen.1003861

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8AH97 Together with BCL1, positive regulator of cell elongation at least partially through increased gibberellic acid (GA) biosynthesis. No verified direct reference in this release
Os02g0705500 Together with BCL1, positive regulator of cell elongation at least partially through increased gibberellic acid (GA) biosynthesis.
Modulation of Rice Leaf Angle and Grain Size by Expressing OsBCL1 and OsBCL2 under the Control of OsBUL1 Promoter.2021 · DOI: 10.3390/ijms22157792

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0006351DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.11; coverage=86.607; evalue=3.44e-66; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006355regulation of DNA-templated transcriptionBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.11; coverage=86.607; evalue=3.44e-66; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009637response to blue lightBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.75; coverage=28.571; evalue=6.75e-40; UniProt GO evidence=IDA:UniProtKBUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009740gibberellic acid mediated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.359; coverage=46.429; evalue=1.61e-40; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009908flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.75; coverage=28.571; evalue=6.75e-40; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009911positive regulation of flower developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.75; coverage=28.571; evalue=6.75e-40; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010372positive regulation of gibberellin biosynthetic processBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.359; coverage=46.429; evalue=1.61e-40; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0045824negative regulation of innate immune responseBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.75; coverage=28.571; evalue=6.75e-40; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0051510regulation of unidimensional cell growthBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=49.359; coverage=46.429; evalue=1.61e-40; UniProt GO evidence=IEA:EnsemblPlantsUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005634nucleusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.11; coverage=86.607; evalue=3.44e-66; UniProt GO evidence=ISM:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003677DNA bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.11; coverage=86.607; evalue=3.44e-66; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0003700DNA-binding transcription factor activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.11; coverage=86.607; evalue=3.44e-66; UniProt GO evidence=ISS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0046983protein dimerization activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.11; coverage=86.607; evalue=3.44e-66; UniProt GO evidence=IEA:InterProUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G42300KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=48.11; coverage=86.607; evalue=3.44e-66UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT3G57800KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=41.067; coverage=111.607; evalue=5.04e-59UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT4G34530KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=68.75; coverage=28.571; evalue=6.75e-40UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os02g0705500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.359; coverage=46.429; evalue=1.68e-40UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGosa:4330462KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=49.359; coverage=46.429; evalue=1.68e-40UniProtKB/Swiss-Prot DAT 2026 current_release