Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene ID	`LXL04_000157`
Query reference	OH1004
Location	Chr01:3291577-3294770 (+)
Description	Similar to DPBF3: ABSCISIC ACID-INSENSITIVE 5-like protein 2 (Arabidopsis thaliana OX%3D3702)
Annotation source assembly	GCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000157 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 26 GO annotations and 7 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g56850`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter.	No verified direct reference in this release
`At2g41070`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter.	No verified direct reference in this release
`At2g36270`	Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth.	A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis.2001 · DOI: 10.1073/pnas.081594298 Regulation of Arabidopsis thaliana Em genes: role of ABI5.2002 · DOI: 10.1046/j.1365-313x.2002.01295.x The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis.2002 · DOI: 10.1105/tpc.000869 Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response.2002 · DOI: 10.1104/pp.005793 ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination.2002 · DOI: 10.1046/j.1365-313x.2002.01430.x Mitogen-activated protein kinase signaling in postgermination arrest of development by abscisic acid.2002 · DOI: 10.1073/pnas.242607499 Interactions of abscisic acid and sugar signalling in the regulation of leaf senescence.2004 · DOI: 10.1007/s00425-004-1279-5 Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis.2006 · DOI: 10.1007/s11103-005-2418-5 Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.2022 · DOI: 10.1111/nph.18149

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0859300`	May act as a transcription factor with transactivation activity observed in yeast.	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.2008 · DOI: 10.1007/s11103-008-9298-4 Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.2011 · DOI: 10.1016/j.phytochem.2010.10.005 A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.2012 · DOI: 10.1093/jxb/err338
`Os06g0211200`	Transcription factor involved in abscisic acid (ABA) signaling pathway.	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes.2011 · DOI: 10.1104/pp.111.173427 Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice.2012 · DOI: 10.1104/pp.111.190389 Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts.2015 · DOI: 10.3389/fpls.2015.00614 MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice.2016 · DOI: 10.1105/tpc.16.00171

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

Type	ID	Name	Namespace	Evidence	Source
GO	GO:0006351	DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.76; coverage=72.308; evalue=2.11e-82; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0006355	regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.76; coverage=72.308; evalue=2.11e-82; UniProt GO evidence=TAS:TIGR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009409	response to cold	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.609; coverage=70.769; evalue=1.59e-34; UniProt GO evidence=IMP:Gramene	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009414	response to water deprivation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.5; coverage=70.33; evalue=2.46e-71; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009651	response to salt stress	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009737	response to abscisic acid	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009738	abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.76; coverage=72.308; evalue=2.11e-82; UniProt GO evidence=IEA:UniProtKB-KW	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009739	response to gibberellin	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.161; coverage=68.132; evalue=1.26e-34; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0009845	seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010115	regulation of abscisic acid biosynthetic process	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.5; coverage=70.33; evalue=2.46e-71; UniProt GO evidence=IEP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010152	pollen maturation	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.609; coverage=70.769; evalue=1.59e-34; UniProt GO evidence=IMP:Gramene	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010182	sugar mediated signaling pathway	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36; UniProt GO evidence=TAS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0010187	negative regulation of seed germination	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0045893	positive regulation of DNA-templated transcription	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.76; coverage=72.308; evalue=2.11e-82; UniProt GO evidence=IEA:InterPro	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0048316	seed development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090332	stomatal closure	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.5; coverage=70.33; evalue=2.46e-71; UniProt GO evidence=IMP:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0090351	seedling development	Biological Process	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.609; coverage=70.769; evalue=1.59e-34; UniProt GO evidence=IMP:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0005634	nucleus	Cellular Component	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.76; coverage=72.308; evalue=2.11e-82; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000976	transcription cis-regulatory region binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.76; coverage=72.308; evalue=2.11e-82; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0000987	cis-regulatory region sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36; UniProt GO evidence=IPI:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0001216	DNA-binding transcription activator activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.5; coverage=70.33; evalue=2.46e-71; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003677	DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.5; coverage=70.33; evalue=2.46e-71; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0003700	DNA-binding transcription factor activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.76; coverage=72.308; evalue=2.11e-82; UniProt GO evidence=ISS:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0042803	protein homodimerization activity	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.609; coverage=70.769; evalue=1.59e-34; UniProt GO evidence=IDA:UniProtKB	UniProtKB/Swiss-Prot DAT 2026 current_release
GO	GO:0043565	sequence-specific DNA binding	Molecular Function	Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.5; coverage=70.33; evalue=2.46e-71; UniProt GO evidence=IDA:TAIR	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G36270	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=3; identity=34.574; coverage=82.637; evalue=2.51e-36	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT2G41070	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=2; identity=47.5; coverage=70.33; evalue=2.46e-71	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	ath:AT3G56850	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=1; identity=50.76; coverage=72.308; evalue=2.11e-82	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os01g0859300	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.609; coverage=70.769; evalue=1.59e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	dosa:Os06g0211200	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.161; coverage=68.132; evalue=1.26e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4325061	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=5; identity=32.609; coverage=70.769; evalue=1.59e-34	UniProtKB/Swiss-Prot DAT 2026 current_release
KEGG	osa:4340462	KEGG gene cross-reference from reviewed UniProt hit; pathway name pending		Swiss-Prot reviewed homolog transfer; hit_rank=4; identity=35.161; coverage=68.132; evalue=1.26e-34	UniProtKB/Swiss-Prot DAT 2026 current_release