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Gene Annotation

Shows the current gene functional description, GO annotations, and KEGG cross-references. Functional annotations retain the source reference; direct Arabidopsis/rice sequence hits are shown separately.

Examples TkA01G624900 LXL04_000258 Reference examples LXL04_039733 TkAUNG001940

Search Results

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Gene IDLXL04_000143
Query referenceOH1004
LocationChr01:3111218-3117189 (+)
DescriptionSimilar to LAX2: Auxin transporter-like protein 2 (Medicago truncatula OX%3D3880)
Annotation source assemblyGCA_047496595.1_OSU_TarKok_2.0

Functional annotation source: OH1004 · LXL04_000143 · GCA_047496595.1_OSU_TarKok_2.0.

This query returns 19 GO annotations and 5 KEGG gene cross-references from the OH1004 annotation record. The download is scoped to this query; these records do not establish KEGG pathway membership.

Arabidopsis / Rice Reference Genes and Papers

Papers describe Arabidopsis or rice reference genes. Functional links to rubber dandelion are based on protein alignments from the queried assembly.

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01240 Carrier protein involved in proton-driven auxin influx. No verified direct reference in this release
At2g38120 Carrier protein involved in proton-driven auxin influx.
Auxin and ethylene promote root hair elongation in Arabidopsis.1998 · DOI: 10.1046/j.1365-313x.1998.00321.x
AUX1 regulates root gravitropism in Arabidopsis by facilitating auxin uptake within root apical tissues.1999 · DOI: 10.1093/emboj/18.8.2066
Auxin is a positive regulator for ethylene-mediated response in the growth of Arabidopsis roots.2001 · DOI: 10.1093/pcp/pce035
The AXR1 and AUX1 genes of Arabidopsis function in separate auxin-response pathways.1995 · DOI: 10.1046/j.1365-313x.1995.8040561.x
Localization of the auxin permease AUX1 suggests two functionally distinct hormone transport pathways operate in the Arabidopsis root apex.2001 · DOI: 10.1101/gad.210501
Cell polarity signaling in Arabidopsis involves a BFA-sensitive auxin influx pathway.2002 · DOI: 10.1016/s0960-9822(02)00654-1
AUX1 promotes lateral root formation by facilitating indole-3-acetic acid distribution between sink and source tissues in the Arabidopsis seedling.2002 · DOI: 10.1105/tpc.010354
Auxin and ethylene response interactions during Arabidopsis root hair development dissected by auxin influx modulators.2002 · DOI: 10.1104/pp.010546
Structure-function analysis of the presumptive Arabidopsis auxin permease AUX1.2004 · DOI: 10.1105/tpc.104.024737
The aux1 Mutation of Arabidopsis Confers Both Auxin and Ethylene Resistance.1990 · DOI: 10.1104/pp.94.3.1462
Genetic analysis of ethylene signal transduction in Arabidopsis thaliana: five novel mutant loci integrated into a stress response pathway.1995 · DOI: 10.1093/genetics/139.3.1393
Ammonium inhibition of Arabidopsis root growth can be reversed by potassium and by auxin resistance mutations aux1, axr1, and axr2.1993 · DOI: 10.1104/pp.102.3.983
Arabidopsis AUX1 gene: a permease-like regulator of root gravitropism.1996 · DOI: 10.1126/science.273.5277.948
Genetic analysis of the effects of polar auxin transport inhibitors on root growth in Arabidopsis thaliana.1996 · DOI: 10.1093/oxfordjournals.pcp.a029059
The Arabidopsis AUX1 gene: a model system to study mRNA processing in plants.1998 · DOI: 10.1023/a:1005961303167
Differential effects of 1-naphthaleneacetic acid, indole-3-acetic acid and 2,4-dichlorophenoxyacetic acid on the gravitropic response of roots in an auxin-resistant mutant of arabidopsis, aux1.1998 · DOI: 10.1093/oxfordjournals.pcp.a029419

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0856500 Carrier protein involved in proton-driven auxin influx. No verified direct reference in this release

GO / KEGG

These GO/KEGG records retain the OH1004 annotation source and original transfer evidence/coverage. Their source-species scope differs from the direct Arabidopsis/rice alignment table.

TypeIDNameNamespaceEvidenceSource
GOGO:0003333amino acid transmembrane transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.874; coverage=99.374; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0006865amino acid transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.229; coverage=98.539; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009624response to nematodeBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=HEP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009734auxin-activated signaling pathwayBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.229; coverage=98.539; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009926auxin polar transportBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=TAS:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009958positive gravitropismBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010262somatic embryogenesisBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.874; coverage=99.374; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010311lateral root formationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=IMP:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048765root hair cell differentiationBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0048829root cap developmentBiological ProcessSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.874; coverage=99.374; evalue=0.0; UniProt GO evidence=IGI:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005768endosomeCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005794Golgi apparatusCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0005886plasma membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.229; coverage=98.539; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-SubCellUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0009986cell surfaceCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0016020membraneCellular ComponentSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.818; coverage=101.044; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010011auxin bindingMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0010328auxin influx transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.874; coverage=99.374; evalue=0.0; UniProt GO evidence=IDA:TAIRUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015171amino acid transmembrane transporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.874; coverage=99.374; evalue=0.0; UniProt GO evidence=IBA:GO_CentralUniProtKB/Swiss-Prot DAT 2026 current_release
GOGO:0015293symporter activityMolecular FunctionSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.229; coverage=98.539; evalue=0.0; UniProt GO evidence=IEA:UniProtKB-KWUniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT2G38120KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=4; identity=84.829; coverage=97.704; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGath:AT5G01240KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=2; identity=84.874; coverage=99.374; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGdosa:Os01g0856500KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=5; identity=81.818; coverage=101.044; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmtr:11407085KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=1; identity=86.229; coverage=98.539; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release
KEGGmtr:25494399KEGG gene cross-reference from reviewed UniProt hit; pathway name pendingSwiss-Prot reviewed homolog transfer; hit_rank=3; identity=84.468; coverage=98.121; evalue=0.0UniProtKB/Swiss-Prot DAT 2026 current_release