record_type input_id synteny_block_id query_reference target_reference query_gene target_gene query_chr query_start query_end target_chr target_start target_end gene_pair_count identity query_coverage target_coverage reciprocal_best_hit relationship_type confidence orientation note evidence_summary source_table block_summary JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 Chr04 56244133 60567838 ChrUn 2023677 6142118 36 High mixed Formal JCVI synteny block from rebuilt ID map pipeline. Formal JCVI synteny block from rebuilt ID map pipeline. synteny_block block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G220690 LXL04_039385 Chr04 56244133 56244891 ChrUn 6141360 6142118 95.7 100.0 100.0 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=95.700; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G220800 LXL04_039383 Chr04 56273201 56274800 ChrUn 6107868 6109479 95.6 100.0 96.61 1 sequence_supported_annotation_or_model_conflict Review category=annotation_conflict; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=95.600; qcov=100.000; tcov=96.610; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G224110 LXL04_039378 Chr04 57015640 57016593 ChrUn 5379552 5380505 91.2 100.0 100.0 1 RBH_sequence_supported Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=91.200; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G226960 LXL04_039369 Chr04 57724413 57729800 ChrUn 4825527 4830132 97.7 100.0 100.0 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=97.700; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G228170 LXL04_039365 Chr04 58000095 58007927 ChrUn 4572791 4580330 99.3 100.0 100.0 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=99.300; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G228680 LXL04_039364 Chr04 58139313 58146093 ChrUn 4399193 4405573 100.0 100.0 100.0 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=100.000; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G228690 LXL04_039363 Chr04 58146705 58151277 ChrUn 4394016 4398124 94.7 100.0 100.0 1 RBH_sequence_supported Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=94.700; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G229680 LXL04_039362 Chr04 58358039 58358344 ChrUn 4222267 4226142 43.8 78.218 32.683 0 non_reciprocal_best_hit Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=0; protein_identity=43.800; qcov=78.218; tcov=32.683; CDS_RBH=0; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G229750 LXL04_039359 Chr04 58368132 58369478 ChrUn 4155271 4156617 89.6 100.0 100.0 1 RBH_below_probable_coverage_or_synteny_threshold Review category=annotation_conflict; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=89.600; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G229990 LXL04_039357 Chr04 58424204 58429400 ChrUn 4095202 4097101 99.7 99.026 100.0 1 multi_source_to_OH1004 Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=99.700; qcov=99.026; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G230650 LXL04_039355 Chr04 58582161 58588598 ChrUn 3907109 3912881 100.0 100.0 100.0 1 multi_candidate_from_TK1151 Complex category=one_to_many; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=100.000; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G230740 LXL04_039345 Chr04 58609514 58612932 ChrUn 3585050 3588550 99.2 100.0 100.0 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=99.200; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G230750 LXL04_039344 Chr04 58612981 58614509 ChrUn 3583679 3584638 93.7 100.0 100.0 1 RBH_sequence_supported Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=93.700; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G230760 LXL04_039343 Chr04 58615095 58620606 ChrUn 3577920 3581155 97.5 100.0 100.0 1 multi_source_to_OH1004 Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=97.500; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G230820 LXL04_039341 Chr04 58637822 58640257 ChrUn 3571078 3573513 99.8 100.0 100.0 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=99.800; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G230840 LXL04_039340 Chr04 58642224 58648967 ChrUn 3563354 3569726 98.3 100.0 100.0 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=98.300; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G230850 LXL04_039339 Chr04 58648886 58650013 ChrUn 3562225 3563376 100.0 100.0 92.254 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=100.000; qcov=100.000; tcov=92.254; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G230860 LXL04_039338 Chr04 58650262 58655621 ChrUn 3557197 3561556 99.8 100.0 98.544 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=99.800; qcov=100.000; tcov=98.544; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G231320 LXL04_039337 Chr04 58738662 58741811 ChrUn 3450296 3453263 90.9 99.605 90.551 1 multi_candidate_from_TK1151 Complex category=one_to_many; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=90.900; qcov=99.605; tcov=90.551; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G232010 LXL04_039335 Chr04 58903714 58904346 ChrUn 3286619 3287308 89.0 100.0 91.703 0 non_reciprocal_best_hit Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=0; protein_identity=89.000; qcov=100.000; tcov=91.703; CDS_RBH=0; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G232510 LXL04_039329 Chr04 59031074 59034023 ChrUn 3176507 3179476 69.1 100.0 99.393 1 RBH_below_probable_coverage_or_synteny_threshold Review category=annotation_conflict; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=69.100; qcov=100.000; tcov=99.393; CDS_RBH=0; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G232520 LXL04_039328 Chr04 59034955 59037659 ChrUn 3148258 3150208 100.0 100.0 66.809 0 non_reciprocal_best_hit Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=0; protein_identity=100.000; qcov=100.000; tcov=66.809; CDS_RBH=0; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G233160 LXL04_039326 Chr04 59190619 59191965 ChrUn 3030182 3033610 99.1 95.339 66.176 1 multi_source_to_OH1004 Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=99.100; qcov=95.339; tcov=66.176; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G233270 LXL04_039324 Chr04 59216140 59218065 ChrUn 3004501 3006045 100.0 100.0 100.0 1 sequence_supported_annotation_or_model_conflict Review category=annotation_conflict; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=100.000; qcov=100.000; tcov=100.000; CDS_RBH=0; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G233780 LXL04_039335 Chr04 59359844 59360476 ChrUn 3286619 3287308 93.3 100.0 91.703 1 RBH_below_probable_coverage_or_synteny_threshold Review category=annotation_conflict; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=93.300; qcov=100.000; tcov=91.703; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G233860 LXL04_039334 Chr04 59387812 59389779 ChrUn 3257118 3261072 90.3 94.633 66.057 0 multi_source_to_OH1004 Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=0; protein_identity=90.300; qcov=94.633; tcov=66.057; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G233890 LXL04_039332 Chr04 59399407 59404966 ChrUn 3242489 3246866 100.0 100.0 100.0 1 RBH_below_probable_coverage_or_synteny_threshold Review category=annotation_conflict; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=100.000; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G234240 LXL04_039330 Chr04 59467471 59471221 ChrUn 3207708 3210790 99.2 100.0 100.0 0 non_reciprocal_best_hit Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=0; protein_identity=99.200; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G234380 LXL04_039329 Chr04 59503863 59506604 ChrUn 3176507 3179476 76.2 99.282 41.355 0 multi_source_to_OH1004 Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=0; protein_identity=76.200; qcov=99.282; tcov=41.355; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G234390 LXL04_039328 Chr04 59507745 59510450 ChrUn 3148258 3150208 100.0 100.0 100.0 1 RBH_below_probable_coverage_or_synteny_threshold Review category=annotation_conflict; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=100.000; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G235070 LXL04_039324 Chr04 59681300 59683224 ChrUn 3004501 3006045 98.6 80.435 56.705 0 non_reciprocal_best_hit Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=0; protein_identity=98.600; qcov=80.435; tcov=56.705; CDS_RBH=0; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G235600 LXL04_039323 Chr04 59855072 59860512 ChrUn 2753996 2758585 97.1 100.0 100.0 1 RBH_high_identity_coverage_local_synteny_minor_chr_pair Probable category=probable_1to1; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=97.100; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G235630 LXL04_039322 Chr04 59868725 59869123 ChrUn 2745134 2745532 91.7 100.0 100.0 1 multi_candidate_from_TK1151 Complex category=one_to_many; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=91.700; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G237160 LXL04_039319 Chr04 60211615 60213396 ChrUn 2412103 2413705 91.3 100.0 100.0 1 multi_candidate_from_TK1151 Complex category=one_to_many; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=91.300; qcov=100.000; tcov=100.000; CDS_RBH=1; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G237190 LXL04_039317 Chr04 60228282 60229826 ChrUn 2370794 2372631 98.4 100.0 71.595 0 multi_source_to_OH1004 Complex category=many_to_one; chr_pair=minor_or_translocated_chromosome_pair; RBH=0; protein_identity=98.400; qcov=100.000; tcov=71.595; CDS_RBH=0; JCVI=JCVI_TKOH_00211 id_converter_ready block_anchor JCVI_TKOH_00211 JCVI_TKOH_00211 TK1151 OH1004 TkA04G238120 LXL04_039315 Chr04 60459924 60468610 ChrUn 2136469 2144967 97.2 100.0 100.0 1 RBH_below_probable_coverage_or_synteny_threshold Review category=annotation_conflict; chr_pair=minor_or_translocated_chromosome_pair; RBH=1; protein_identity=97.200; qcov=100.000; tcov=100.000; CDS_RBH=0; JCVI=JCVI_TKOH_00211 id_converter_ready