query	query_gene_id	query_protein_id	source_reference	hit_rank	swissprot_acc	swissprot_entry	database_section	target_gene_id	description	organism	homolog_gene_name	percent_identity	alignment_length	query_coverage	evalue	bitscore	confidence	evidence_type	source_db	reference_gene_id	reference_function_zh	reference_function_en	reference_papers_json
LXL04_002299	gene-LXL04_002299	KAL4589392.1	OH-1004	1	Q5YDB6	CPL1_ARATH	Swiss-Prot		RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1	Arabidopsis thaliana	CPL1	39.64	222	51.928	1.03e-32	133.0	moderate_database_homology	BLASTP to reviewed UniProt Swiss-Prot	UniProt Swiss-Prot current_release 2026-06-10	At4g21670	连续催化RNA聚合酶Ⅱ最大亚基RPB1的C端结构域中七肽重复序列YSPTSPS的Ser-5去磷酸化，但不催化Ser-2去磷酸化。	Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1).	"[{""pmid"":""11874572"",""title"":""Fusion genetic analysis of jasmonate-signalling mutants in Arabidopsis."",""doi"":""10.1046/j.0960-7412.2001.01241.x"",""url"":""https://pubmed.ncbi.nlm.nih.gov/11874572/"",""year"":""2002"",""journal"":""The Plant journal : for cell and molecular biology"",""authors"":""Jensen AB, Raventos D, Mundy J."",""matched_aliases"":[""JOE1""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""12149434"",""title"":""C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development."",""doi"":""10.1073/pnas.112276199"",""url"":""https://pubmed.ncbi.nlm.nih.gov/12149434/"",""year"":""2002"",""journal"":""Proceedings of the National Academy of Sciences of the United States of America"",""authors"":""Koiwa H, Barb AW, Xiong L, Li F, McCully MG, Lee BH, Sokolchik I, Zhu J, Gong Z, Reddy M, Sharkhuu A, Manabe Y, Yokoi S, Zhu JK, Bressan RA, Hasegawa PM."",""matched_aliases"":[""AtCPL1"",""CPL1""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""12149453"",""title"":""Repression of stress-responsive genes by FIERY2, a novel transcriptional regulator in Arabidopsis."",""doi"":""10.1073/pnas.162111599"",""url"":""https://pubmed.ncbi.nlm.nih.gov/12149453/"",""year"":""2002"",""journal"":""Proceedings of the National Academy of Sciences of the United States of America"",""authors"":""Xiong L, Lee H, Ishitani M, Tanaka Y, Stevenson B, Koiwa H, Bressan RA, Hasegawa PM, Zhu JK."",""matched_aliases"":[""CPL1"",""FRY2""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""15388846"",""title"":""Arabidopsis C-terminal domain phosphatase-like 1 and 2 are essential Ser-5-specific C-terminal domain phosphatases."",""doi"":""10.1073/pnas.0403174101"",""url"":""https://pubmed.ncbi.nlm.nih.gov/15388846/"",""year"":""2004"",""journal"":""Proceedings of the National Academy of Sciences of the United States of America"",""authors"":""Koiwa H, Hausmann S, Bang WY, Ueda A, Kondo N, Hiraguri A, Fukuhara T, Bahk JD, Yun DJ, Bressan RA, Hasegawa PM, Shuman S."",""matched_aliases"":[""AtCPL1"",""CPL1""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""18764923"",""title"":""CTD phosphatases in the attenuation of wound-induced transcription of jasmonic acid biosynthetic genes in Arabidopsis."",""doi"":""10.1111/j.1365-313x.2008.03663.x"",""url"":""https://pubmed.ncbi.nlm.nih.gov/18764923/"",""year"":""2009"",""journal"":""The Plant journal : for cell and molecular biology"",""authors"":""Matsuda O, Sakamoto H, Nakao Y, Oda K, Iba K."",""matched_aliases"":[""CPL1""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""23874224"",""title"":""The arabidopsis RNA binding protein with K homology motifs, SHINY1, interacts with the C-terminal domain phosphatase-like 1 (CPL1) to repress stress-inducible gene expression."",""doi"":""10.1371/journal.pgen.1003625"",""url"":""https://pubmed.ncbi.nlm.nih.gov/23874224/"",""year"":""2013"",""journal"":""PLoS genetics"",""authors"":""Jiang J, Wang B, Shen Y, Wang H, Feng Q, Shi H."",""matched_aliases"":[""CPL1"",""SHI4""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""26227967"",""title"":""The RNA-binding protein HOS5 and serine/arginine-rich proteins RS40 and RS41 participate in miRNA biogenesis in Arabidopsis."",""doi"":""10.1093/nar/gkv751"",""url"":""https://pubmed.ncbi.nlm.nih.gov/26227967/"",""year"":""2015"",""journal"":""Nucleic acids research"",""authors"":""Chen T, Cui P, Xiong L."",""matched_aliases"":[""CPL1"",""FRY2""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""26887918"",""title"":""The RNA Polymerase II C-Terminal Domain Phosphatase-Like Protein FIERY2/CPL1 Interacts with eIF4AIII and Is Essential for Nonsense-Mediated mRNA Decay in Arabidopsis."",""doi"":""10.1105/tpc.15.00771"",""url"":""https://pubmed.ncbi.nlm.nih.gov/26887918/"",""year"":""2016"",""journal"":""The Plant cell"",""authors"":""Cui P, Chen T, Qin T, Ding F, Wang Z, Chen H, Xiong L."",""matched_aliases"":[""CPL1"",""FRY2""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false}]"
LXL04_002299	gene-LXL04_002299	KAL4589392.1	OH-1004	2	F4JLP5	PLPD2_ARATH	Swiss-Prot		Dihydrolipoyl dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPD2 PE=2 SV=2	Arabidopsis thaliana	LPD2	85.366	41	10.54	2.25e-14	78.2	weak_database_homology	BLASTP to reviewed UniProt Swiss-Prot	UniProt Swiss-Prot current_release 2026-06-10	At4g16155	复合脂酰胺脱氢酶是质体丙酮酸脱氢酶复合物（PDC）的组成部分。	Lipoamide dehydrogenase is a component of the plastidial pyruvate dehydrogenase complex (PDC).	[]
LXL04_002299	gene-LXL04_002299	KAL4589392.1	OH-1004	3	A8MS68	PLPD1_ARATH	Swiss-Prot		Dihydrolipoyl dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPD1 PE=2 SV=1	Arabidopsis thaliana	LPD1	75.556	45	11.568	8.54e-14	76.6	weak_database_homology	BLASTP to reviewed UniProt Swiss-Prot	UniProt Swiss-Prot current_release 2026-06-10	At3g16950	复合脂酰胺脱氢酶是质体丙酮酸脱氢酶复合物（PDC）的组成部分。	Lipoamide dehydrogenase is a component of the plastidial pyruvate dehydrogenase complex (PDC).	[]
LXL04_002299	gene-LXL04_002299	KAL4589392.1	OH-1004	5	Q5YDB5	CPL2_ARATH	Swiss-Prot		RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3	Arabidopsis thaliana	CPL2	33.577	137	34.447	1.63e-10	66.6	weak_database_homology	BLASTP to reviewed UniProt Swiss-Prot	UniProt Swiss-Prot current_release 2026-06-10	At5g01270	连续催化RNA聚合酶Ⅱ最大亚基RPB1的C端结构域中七肽重复序列YSPTSPS的Ser-5去磷酸化，但不催化Ser-2去磷酸化。	Processively dephosphorylates 'Ser-5' but not 'Ser-2' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1).	"[{""pmid"":""15388846"",""title"":""Arabidopsis C-terminal domain phosphatase-like 1 and 2 are essential Ser-5-specific C-terminal domain phosphatases."",""doi"":""10.1073/pnas.0403174101"",""url"":""https://pubmed.ncbi.nlm.nih.gov/15388846/"",""year"":""2004"",""journal"":""Proceedings of the National Academy of Sciences of the United States of America"",""authors"":""Koiwa H, Hausmann S, Bang WY, Ueda A, Kondo N, Hiraguri A, Fukuhara T, Bahk JD, Yun DJ, Bressan RA, Hasegawa PM, Shuman S."",""matched_aliases"":[""AtCPL2"",""CPL2""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""18506580"",""title"":""The Arabidopsis thaliana carboxyl-terminal domain phosphatase-like 2 regulates plant growth, stress and auxin responses."",""doi"":""10.1007/s11103-008-9348-y"",""url"":""https://pubmed.ncbi.nlm.nih.gov/18506580/"",""year"":""2008"",""journal"":""Plant molecular biology"",""authors"":""Ueda A, Li P, Feng Y, Vikram M, Kim S, Kang CH, Kang JS, Bahk JD, Lee SY, Fukuhara T, Staswick PE, Pepper AE, Koiwa H."",""matched_aliases"":[""CPL2""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""28808009"",""title"":""A protein complex regulates RNA processing of intronic heterochromatin-containing genes in  Arabidopsis ."",""doi"":""10.1073/pnas.1710683114"",""url"":""https://pubmed.ncbi.nlm.nih.gov/28808009/"",""year"":""2017"",""journal"":""Proceedings of the National Academy of Sciences of the United States of America"",""authors"":""Duan CG, Wang X, Zhang L, Xiong X, Zhang Z, Tang K, Pan L, Hsu CC, Xu H, Tao WA, Zhang H, Zhu JK."",""matched_aliases"":[""CPL2""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false},{""pmid"":""33277495"",""title"":""Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis."",""doi"":""10.1038/s41467-020-20089-0"",""url"":""https://pubmed.ncbi.nlm.nih.gov/33277495/"",""year"":""2020"",""journal"":""Nature communications"",""authors"":""Zhang YZ, Yuan J, Zhang L, Chen C, Wang Y, Zhang G, Peng L, Xie SS, Jiang J, Zhu JK, Du J, Duan CG."",""matched_aliases"":[""CPL2""],""evidence"":""UniProt FUNCTION; UniProt/PubMed metadata and gene/species abstract checks; EuropePMC cross-check where available"",""metadata_sources"":[""UniProt"",""PubMed"",""EuropePMC""],""fulltext_reviewed"":false}]"